Last updated on 2025-09-25 01:50:39 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| hmde | 8 | 2 | 3 |
Current CRAN status: ERROR: 8, NOTE: 2, OK: 3
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.26 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.001245 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 12.45 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.157 seconds (Warm-up)
Chain 1: 0.965 seconds (Sampling)
Chain 1: 1.122 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.001306 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 13.06 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 6.332 seconds (Warm-up)
Chain 2: 7.555 seconds (Sampling)
Chain 2: 13.887 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.238 seconds (Warm-up)
Chain 1: 0.731 seconds (Sampling)
Chain 1: 0.969 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.001 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.1e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.002 seconds (Warm-up)
Chain 2: 0.007 seconds (Sampling)
Chain 2: 0.009 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.46 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.684 seconds (Warm-up)
Chain 1: 1.15 seconds (Sampling)
Chain 1: 1.834 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.00354 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 35.4 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1: Elapsed Time: 0.009 seconds (Warm-up)
Chain 1: 0.016 seconds (Sampling)
Chain 1: 0.025 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.3 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2: Elapsed Time: 0.006 seconds (Warm-up)
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Chain 2: 0.022 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.52 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1: Elapsed Time: 0.092 seconds (Warm-up)
Chain 1: 0.065 seconds (Sampling)
Chain 1: 0.157 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.077 seconds (Warm-up)
Chain 1: 0.057 seconds (Sampling)
Chain 1: 0.134 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000999 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 9.99 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 2.06 seconds (Warm-up)
Chain 1: 0.193 seconds (Sampling)
Chain 1: 2.253 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.000892 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 8.92 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.66 seconds (Warm-up)
Chain 2: 0.518 seconds (Sampling)
Chain 2: 1.178 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9e-06 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.09 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.135 seconds (Warm-up)
Chain 1: 0.436 seconds (Sampling)
Chain 1: 0.571 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1: 0.006 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 7e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.07 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2: 0.009 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.741 seconds (Warm-up)
Chain 1: 1.036 seconds (Sampling)
Chain 1: 1.777 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.62 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
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Chain 1: 0.02 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3.5e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
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Chain 2: 0.041 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.4 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1: Elapsed Time: 0.087 seconds (Warm-up)
Chain 1: 0.025 seconds (Sampling)
Chain 1: 0.112 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
Chain 1: Elapsed Time: 0.062 seconds (Warm-up)
Chain 1: 0.032 seconds (Sampling)
Chain 1: 0.094 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [27s/60s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.35 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.006167 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 61.67 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.679 seconds (Warm-up)
Chain 1: 3.662 seconds (Sampling)
Chain 1: 4.341 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.006045 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 60.45 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
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Chain 2:
Chain 2: Elapsed Time: 0.393 seconds (Warm-up)
Chain 2: 0.744 seconds (Sampling)
Chain 2: 1.137 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.7e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1: Elapsed Time: 1.122 seconds (Warm-up)
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Chain 1: 3.264 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1: WARNING: No variance estimation is
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1.4e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.14 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.008 seconds (Warm-up)
Chain 2: 0.065 seconds (Sampling)
Chain 2: 0.073 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.9e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.29 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
Chain 1: Elapsed Time: 2.58 seconds (Warm-up)
Chain 1: 2.398 seconds (Sampling)
Chain 1: 4.978 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 8.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.83 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1: Elapsed Time: 0.007 seconds (Warm-up)
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Chain 1: 0.014 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 7.6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.76 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: Elapsed Time: 0.011 seconds (Warm-up)
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Chain 2: 0.193 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.61 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
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Chain 1: term_buffer = 2
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Chain 1: 0.341 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.66 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.313 seconds (Warm-up)
Chain 1: 0.17 seconds (Sampling)
Chain 1: 0.483 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/63s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
Chain 1: Iteration: 1 / 20 [ 5%] (Warmup)
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Chain 1: Iteration: 20 / 20 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.009 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.009 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.002464 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 24.64 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.205 seconds (Warm-up)
Chain 1: 4.203 seconds (Sampling)
Chain 1: 4.408 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002397 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 23.97 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 7.9e-05 seconds
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Chain 1:
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.65 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.5e-05 seconds
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SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 0.001469 seconds
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SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
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Chain 2: Gradient evaluation took 0.001313 seconds
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SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.2e-05 seconds
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SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 1.7e-05 seconds
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Chain 2: Gradient evaluation took 9e-06 seconds
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SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 2.8e-05 seconds
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SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
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Chain 1: Gradient evaluation took 8e-05 seconds
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Chain 1:
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Chain 1: three stages of adaptation as currently configured.
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Chain 1: Gradient evaluation took 4.8e-05 seconds
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Chain 1:
Chain 1: Elapsed Time: 0.062 seconds (Warm-up)
Chain 1: 0.06 seconds (Sampling)
Chain 1: 0.122 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/22s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.28 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.001769 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 17.69 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.158 seconds (Warm-up)
Chain 1: 1.68 seconds (Sampling)
Chain 1: 1.838 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.0013 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 13 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
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Chain 2: 0.496 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.11 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 1e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
Chain 1: Elapsed Time: 0.543 seconds (Warm-up)
Chain 1: 1.103 seconds (Sampling)
Chain 1: 1.646 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 6.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.68 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.7e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.27 seconds.
Chain 2: Adjust your expectations accordingly!
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Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.58 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
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Chain 1: term_buffer = 2
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.52 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
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Chain 1: term_buffer = 2
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Chain 1: Elapsed Time: 0.128 seconds (Warm-up)
Chain 1: 0.075 seconds (Sampling)
Chain 1: 0.203 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 2.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.24 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.001687 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 16.87 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
Chain 1: performed for num_warmup < 20
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Chain 1:
Chain 1: Elapsed Time: 0.091 seconds (Warm-up)
Chain 1: 11.094 seconds (Sampling)
Chain 1: 11.185 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.002906 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 29.06 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: WARNING: No variance estimation is
Chain 2: performed for num_warmup < 20
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.211 seconds (Warm-up)
Chain 2: 0.284 seconds (Sampling)
Chain 2: 0.495 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.1 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.283 seconds (Warm-up)
Chain 1: 0.635 seconds (Sampling)
Chain 1: 0.918 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 8e-06 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.08 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.005 seconds (Warm-up)
Chain 2: 0.001 seconds (Sampling)
Chain 2: 0.006 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 3.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
Chain 1: Elapsed Time: 1.052 seconds (Warm-up)
Chain 1: 1.583 seconds (Sampling)
Chain 1: 2.635 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.2e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.92 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.018 seconds (Warm-up)
Chain 1: 0.006 seconds (Sampling)
Chain 1: 0.024 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 3.2e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.32 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: Elapsed Time: 0.007 seconds (Warm-up)
Chain 2: 0.011 seconds (Sampling)
Chain 2: 0.018 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.45 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
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Chain 1: Elapsed Time: 0.144 seconds (Warm-up)
Chain 1: 0.148 seconds (Sampling)
Chain 1: 0.292 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 4.3e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
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Chain 1:
Chain 1: Elapsed Time: 0.155 seconds (Warm-up)
Chain 1: 0.121 seconds (Sampling)
Chain 1: 0.276 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.2.1
Check: installed package size
Result: NOTE
installed size is 113.0Mb
sub-directories of 1Mb or more:
article 3.0Mb
doc 1.1Mb
libs 108.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [27s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(hmde)
>
> test_check("hmde")
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.4e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.54 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.001 seconds (Warm-up)
Chain 1: 0 seconds (Sampling)
Chain 1: 0.001 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.004185 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 41.85 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1:
Chain 1: Elapsed Time: 0.127 seconds (Warm-up)
Chain 1: 0.251 seconds (Sampling)
Chain 1: 0.378 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'canham_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.00388 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 38.8 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: Elapsed Time: 1.677 seconds (Warm-up)
Chain 2: 2.535 seconds (Sampling)
Chain 2: 4.212 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 1.8e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.18 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
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Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 2.5e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.25 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2:
Chain 2: Elapsed Time: 0.01 seconds (Warm-up)
Chain 2: 0.003 seconds (Sampling)
Chain 2: 0.013 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'vb_single_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 5.5e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.55 seconds.
Chain 1: Adjust your expectations accordingly!
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Chain 1:
Chain 1: Elapsed Time: 1.428 seconds (Warm-up)
Chain 1: 2.075 seconds (Sampling)
Chain 1: 3.503 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000119 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.19 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: No variance estimation is
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Chain 1: 0.046 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'vb_multi_ind' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 6e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.6 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
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Chain 2: 0.029 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.6e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.96 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
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Chain 1: 0.063 seconds (Sampling)
Chain 1: 0.139 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'constant_multi_ind' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 9.1e-05 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.91 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: WARNING: There aren't enough warmup iterations to fit the
Chain 1: three stages of adaptation as currently configured.
Chain 1: Reducing each adaptation stage to 15%/75%/10% of
Chain 1: the given number of warmup iterations:
Chain 1: init_buffer = 3
Chain 1: adapt_window = 20
Chain 1: term_buffer = 2
Chain 1:
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Chain 1:
Chain 1: Elapsed Time: 0.157 seconds (Warm-up)
Chain 1: 0.073 seconds (Sampling)
Chain 1: 0.23 seconds (Total)
Chain 1:
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-hmde_plot_de_pieces.R:17:3'): Execution and output: plot_de_pieces function ──
`plot` does not have names.
── Failure ('test-hmde_plot_de_pieces.R:21:3'): Execution and output: plot_de_pieces function ──
`plot` has type 'object', not 'list'.
── Failure ('test-hmde_plot_obs_est_inds.R:5:3'): Execution and output: plot_obs_est_inds function ──
`plot` does not have names.
── Failure ('test-hmde_plot_obs_est_inds.R:9:3'): Execution and output: plot_obs_est_inds function ──
`plot` has type 'object', not 'list'.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64