RPesto: Phylogenetic Estimation of Shifts in the Tempo of Origination

Implements diversification analyses using the phylogenetic birth-death-shift model. It leverages belief propagation techniques to calculate branch-specific diversification rates, see Kopperud & Hoehna (2025) <doi:10.1093/sysbio/syaf041>.

Version:	0.1.4
Depends:	R (≥ 4.2)
Imports:	tidytree, treeio, ape
Published:	2025-11-26
DOI:	10.32614/CRAN.package.RPesto (may not be active yet)
Author:	Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut]
Maintainer:	Bjørn Tore Kopperud <kopperud at protonmail.com>
License:	MIT + file LICENSE
NeedsCompilation:	yes
SystemRequirements:	Cargo (Rust's package manager), rustc
Materials:	NEWS
CRAN checks:	RPesto results

Documentation:

Reference manual:

RPesto.html , RPesto.pdf

Downloads:

Package source:	RPesto_0.1.4.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): RPesto_0.1.4.tgz, r-oldrel (arm64): RPesto_0.1.4.tgz, r-release (x86_64): RPesto_0.1.4.tgz, r-oldrel (x86_64): RPesto_0.1.4.tgz

Linking:

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