Non-Negative Matrix Factorization for Single-Cell Omics
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Documentation for package ‘GeneNMF’ version 0.6.0
Help Pages
| findVariableFeatures_wfilters | Find variable features |
| getDataMatrix | Extract data matrix from Seurat object |
| getMetaPrograms | Extract consensus gene programs (meta-programs) |
| getNMFgenes | Get list of genes for each NMF program |
| multiNMF | Run NMF on a list of Seurat objects |
| multiPCA | Run PCA on a list of Seurat objects |
| plotMetaPrograms | Visualizations for meta-programs |
| runGSEA | Run Gene set enrichment analysis |
| runNMF | Compute NMF as a low-dim embedding for Seurat |
| sampleObj | Sample dataset to test GeneNMF installation |