Tests of Multispecies Coalescent Gene Tree Simulator Output

---

Documentation for package ‘MSCsimtester’ version 1.1

• DESCRIPTION file.

Help Pages

MSCsimtester-package	Validity tests of simulators of the multspecies coalescent model in phylogenomics.
ADtest	Anderson-Darling test comparing sample and theoretical pairwise distance distributions.
genetreeSample	Simulated gene tree dataset.
MSCsimtester	Validity tests of simulators of the multspecies coalescent model in phylogenomics.
pairwiseDist	Compute and plot sample and theoretical pairwise distance densities.
plotEdgeOrder	Plot species tree, with edge numbers on edges.
plotPops	Plot species tree, with population sizes on edges.
print.ADtestOutput	Print function for objects of class 'ADtestOutput'.
print.rootedTripleOutput	Print function for objects of class 'rootedTripleOutput'.
rootedTriple	Compare expected and sample frequencies of topological rooted triples.