Last updated on 2025-08-28 01:52:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.4 | 8.41 | 179.30 | 187.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.4 | 5.11 | 72.14 | 77.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.4 | 295.16 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.4 | 301.53 | OK | |||
| r-devel-windows-x86_64 | 2.1.4 | 11.00 | 334.00 | 345.00 | OK | |
| r-patched-linux-x86_64 | 2.1.4 | 7.77 | 92.91 | 100.68 | OK | |
| r-release-linux-x86_64 | 2.1.4 | 7.23 | 168.31 | 175.54 | OK | |
| r-release-macos-arm64 | 2.1.4 | 326.00 | OK | |||
| r-release-macos-x86_64 | 2.1.4 | 283.00 | OK | |||
| r-release-windows-x86_64 | 2.1.4 | 11.00 | 369.00 | 380.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.4 | 221.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.4 | 312.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.4 | 14.00 | 476.00 | 490.00 | OK |
Version: 2.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PubChemR)
>
> # Functions used globally in package tests (testthat) ----
> allSuccess <- function(object){
+ all(unlist(lapply(object$result, "[[", "success")))
+ }
>
> testRequest <- function(object, ...){
+ test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
+ expect_true(allSuccess(object))
+ })
+
+ test_that("prints output to the R Console", {
+ expect_output(print(object))
+ })
+ }
>
> # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
> # all tests on GitHub actions since some of PubChem requests were incomplete due to
> # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
> # even if all tests were passed on local installations of R.
> skipTests <- FALSE
>
> if (!skipTests){
+ test_check("PubChemR")
+ }
The file has been saved to '/tmp/RtmptJeIyG/aspirin.json'
The file has been saved to '/tmp/RtmptJeIyG/aspirin.json'
The file has been saved to '/tmp/RtmptJeIyG/aspirin.json'
The file has been saved to '/tmp/RtmptJeIyG/aspirin.json'
The file has been saved to '/tmp/RtmptJeIyG/aspirin.sdf'
Request failed [400]. Retrying in 1.4 seconds...
Request failed [400]. Retrying in 5.8 seconds...
SDF file saved successfully:
File Name: 'aspirin_20250827_135333.sdf'
Saved at: /tmp/RtmptJeIyG
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: /tmp/RtmptJeIyG
'path' is not specified. Saving files into a temporary folder.
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: /tmp/RtmptJeIyG
[ FAIL 4 | WARN 7 | SKIP 0 | PASS 166 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_substances.R:6:1'): pulling via 'name' is succesfull ─────
allSuccess(object) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-get_substances.R:35:3'): '.verbose' works as expected ────────
retrieve(...) returns visibly, not invisibly.
── Failure ('test-get_substances.R:38:3'): '.verbose' works as expected ────────
retrieve(...) returns visibly, not invisibly.
── Failure ('test-get_substances.R:50:3'): return error for unavailable substance idx. ──
`retrieve(tmp, .slot = "comment", .to.data.frame = TRUE, .idx = 66666)` did not throw the expected error.
[ FAIL 4 | WARN 7 | SKIP 0 | PASS 166 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc