Last updated on 2025-09-22 01:51:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.12 | 3.02 | 35.95 | 38.97 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.12 | 2.26 | 26.10 | 28.36 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.12 | 52.90 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.12 | 48.97 | OK | |||
| r-devel-windows-x86_64 | 2.1.12 | 5.00 | 61.00 | 66.00 | OK | |
| r-patched-linux-x86_64 | 2.1.12 | 2.79 | 33.77 | 36.56 | OK | |
| r-release-linux-x86_64 | 2.1.12 | 2.61 | 34.71 | 37.32 | OK | |
| r-release-macos-arm64 | 2.1.12 | 47.00 | OK | |||
| r-release-macos-x86_64 | 2.1.12 | 59.00 | OK | |||
| r-release-windows-x86_64 | 2.1.12 | 5.00 | 63.00 | 68.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.12 | 51.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.12 | 65.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.12 | 6.00 | 67.00 | 73.00 | OK |
Version: 2.1.12
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/88s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cthist)
>
> test_check("cthist")
Error downloading version: NCT05827978 version 3
Here's the original error message:
Error in curl::curl_fetch_memory(url, handle = handle): Timeout was reached [clinicaltrials.gov]:
Resolving timed out after 10001 milliseconds
Error downloading version: NCT00942747 version 1
Here's the original error message:
Error in curl::curl_fetch_memory(url, handle = handle): Timeout was reached [clinicaltrials.gov]:
Resolving timed out after 10000 milliseconds
Error downloading version: NCT02110043 version 1
Here's the original error message:
Error in curl::curl_fetch_memory(url, handle = handle): Timeout was reached [clinicaltrials.gov]:
Resolving timed out after 10003 milliseconds
Error downloading version: NCT02110043 version 1
Here's the original error message:
Error in curl::curl_fetch_memory(url, handle = handle): Timeout was reached [clinicaltrials.gov]:
Resolving timed out after 10001 milliseconds
Error downloading version: NCT02110043 version 1
Here's the original error message:
Error in curl::curl_fetch_memory(url, handle = handle): Timeout was reached [clinicaltrials.gov]:
Connection timed out after 10000 milliseconds
NCT02586649 - 4 of 4
2025-09-21 15:19:47.254484 NCT02586649 processed (4 versions, 100%)
Rows: 1 Columns: 29
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (20): nctid, overall_status, study_start_date_precision, primary_comple...
dbl (3): version_number, total_versions, enrolment
lgl (3): accepts_healthy_volunteers, whystopped, results_posted
date (3): version_date, study_start_date, primary_completion_date
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 4 Columns: 29
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (20): nctid, overall_status, study_start_date_precision, primary_comple...
dbl (3): version_number, total_versions, enrolment
lgl (3): accepts_healthy_volunteers, whystopped, results_posted
date (3): version_date, study_start_date, primary_completion_date
i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 29 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-clinicaltrials_gov_dates.R:2:5'): ClinicalTrials.gov version dates download correctly ──
Error in `value[[3L]](cond)`: object 'nctid' not found
Backtrace:
▆
1. └─cthist::clinicaltrials_gov_dates("NCT00942747") at test-clinicaltrials_gov_dates.R:2:5
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. ├─base (local) tryCatchOne(...)
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─base (local) tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
9. ├─base::message(paste("Error downloading NCT ID:", nctid))
10. └─base::paste("Error downloading NCT ID:", nctid)
── Error ('test-clinicaltrials_gov_download.R:6:5'): ClinicalTrials.gov history entries mass-download correctly ──
<curl_error_operation_timedout/curl_error/error/condition>
Error in `curl::curl_fetch_memory(url, handle = handle)`: Timeout was reached [clinicaltrials.gov]:
Resolving timed out after 10001 milliseconds
Backtrace:
▆
1. ├─cthist::clinicaltrials_gov_download(...) at test-clinicaltrials_gov_download.R:6:5
2. │ ├─httr::http_error("https://clinicaltrials.gov")
3. │ └─httr:::http_error.character("https://clinicaltrials.gov")
4. │ ├─httr::http_error(HEAD(x, ...))
5. │ └─httr::HEAD(x, ...)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
9. │ └─curl::curl_fetch_memory(url, handle = handle)
10. └─curl:::raise_libcurl_error(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 29 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc