Last updated on 2025-09-26 01:48:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 10.67 | 104.77 | 115.44 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 7.60 | 74.40 | 82.00 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 185.60 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 198.90 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.0 | 12.00 | 212.00 | 224.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.0 | 9.61 | 95.69 | 105.30 | ERROR | |
| r-release-linux-x86_64 | 0.2.0 | 9.08 | 97.43 | 106.51 | ERROR | |
| r-release-macos-arm64 | 0.2.0 | 64.00 | OK | |||
| r-release-macos-x86_64 | 0.2.0 | 103.00 | OK | |||
| r-release-windows-x86_64 | 0.2.0 | 13.00 | 152.00 | 165.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.0 | 67.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.0 | 105.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.2.0 | 19.00 | 207.00 | 226.00 | ERROR |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
>
> ### ** Examples
>
>
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• hang = hang
• color = "grey50"
• size = 1
ℹ Did you misspell an argument name?
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
>
> # view
> p
>
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
>
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
▆
1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
2. ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
3. └─purrr::pluck(p_build, 1, 2)
4. └─purrr:::pluck_raw(.x, list2(...), .default = .default)
5. └─purrr:::stop_bad_element_type(...)
6. └─cli::cli_abort(...)
7. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
delim_autoplot 4.434 0.055 5.177
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-oldrel-windows-x86_64
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
>
> ### ** Examples
>
>
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
>
> # view
> p
>
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
>
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
▆
1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
2. ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
3. └─purrr::pluck(p_build, 1, 2)
4. └─purrr:::pluck_raw(.x, list2(...), .default = .default)
5. └─purrr:::stop_bad_element_type(...)
6. └─cli::cli_abort(...)
7. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Undeclared package ‘viridisLite’ in Rd xrefs
Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
>
> ### ** Examples
>
>
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• hang = hang
• color = "grey50"
• size = 1
ℹ Did you misspell an argument name?
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
>
> # view
> p
>
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
>
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
▆
1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
2. ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
3. └─purrr::pluck(p_build, 1, 2)
4. └─purrr:::pluck_raw(.x, list2(...), .default = .default)
5. └─purrr:::stop_bad_element_type(...)
6. └─cli::cli_abort(...)
7. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
>
> ### ** Examples
>
>
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• hang = hang
• color = "grey50"
• size = 1
ℹ Did you misspell an argument name?
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
>
> # view
> p
>
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
>
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
▆
1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
2. ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
3. └─purrr::pluck(p_build, 1, 2)
4. └─purrr:::pluck_raw(.x, list2(...), .default = .default)
5. └─purrr:::stop_bad_element_type(...)
6. └─cli::cli_abort(...)
7. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
delim_autoplot 4.393 0.1 6.122
Flavor: r-patched-linux-x86_64
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_delim_cols
> ### Title: Extract Labels and Colors from Species Delimitation Partitions
> ### Aliases: get_delim_cols
>
> ### ** Examples
>
>
> # plot using autoplot
> p <- delim_autoplot(geophagus_delims, geophagus_beast)
Warning: ⚠ Argument `tbl_labs` not provided. Using tiplabels instead.
Warning in fortify(data, ...) : Arguments in `...` must be used.
✖ Problematic arguments:
• as.Date = as.Date
• yscale_mapping = yscale_mapping
• hang = hang
• color = "grey50"
• size = 1
ℹ Did you misspell an argument name?
Warning: ⚠ Argument `delim_order` not provided. Using default order from
`geophagus_delims`.
Warning: ⚠ Argument `col_vec` not provided. Customizing one using `delim_brewer()`.
ℹ Please use `delimtools::delim_brewer()` to create even better colour
palettes!
Warning: ⚠ `n_match` was not found. Using `n_match= 4` instead.
>
> # view
> p
>
> # get haplotypes
> hap_tbl <- haplotype_tbl(geophagus)
Warning: ⚠ You have missing data "('N','-' '?')" or ambiguity inside your sequence, i.e.
not padding the ends, and this may have unintended consequences later, as they
have now been removed!
ℹ The names of the samples are bellow.
GU701784.1, GU701785.1
>
> # extract colors for consensus
> get_delim_cols(p, delimname= "consensus", hap_tbl= hap_tbl)
Error in `pluck_raw()`:
! Index 1 must be a string, not a number.
Backtrace:
▆
1. └─delimtools::get_delim_cols(p, delimname = "consensus", hap_tbl = hap_tbl)
2. ├─rlang::is_empty(purrr::pluck(p_build, 1, 2))
3. └─purrr::pluck(p_build, 1, 2)
4. └─purrr:::pluck_raw(.x, list2(...), .default = .default)
5. └─purrr:::stop_bad_element_type(...)
6. └─cli::cli_abort(...)
7. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
delim_autoplot 4.185 0.150 5.718
delim_autoplot2 3.588 0.008 5.673
Flavor: r-release-linux-x86_64
Version: 0.2.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'bGMYC', 'splits'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘bGMYC’, ‘splits’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64