Last updated on 2025-11-02 02:51:22 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/140s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.047, elapsed: 2.431 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.385, system: 0.110, elapsed: 12.459 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.198, system: 0.016, elapsed: 0.363 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.989, system: 0.223, elapsed: 5.094 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.003, elapsed: 0.172 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.861, system: 0.424, elapsed: 21.296 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.502, system: 0.038, elapsed: 1.626 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.388, system: 0.165, elapsed: 16.071 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.206, system: 0.018, elapsed: 0.342 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.122, system: 0.286, elapsed: 6.488 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.008, elapsed: 0.270 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.933, system: 0.542, elapsed: 25.519 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.791, system: 0.077, elapsed: 2.626 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.760, system: 0.316, elapsed: 13.922 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.016, elapsed: 0.296 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.028, system: 0.278, elapsed: 5.972 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.009, elapsed: 0.227 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.250, system: 0.249, elapsed: 1.052 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.849, system: 0.984, elapsed: 25.075 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.804, system: 0.094, elapsed: 2.898 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.720, system: 0.302, elapsed: 25.812 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.207, system: 0.020, elapsed: 0.577 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.181, system: 0.310, elapsed: 8.735 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.012, elapsed: 0.327 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.854, system: 0.537, elapsed: 20.543 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.620, system: 1.325, elapsed: 60.174 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/135s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.588, system: 0.038, elapsed: 3.077 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.471, system: 0.067, elapsed: 15.017 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.015, elapsed: 0.320 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.695, system: 0.175, elapsed: 5.858 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.005, elapsed: 0.345 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.690, system: 0.324, elapsed: 25.611 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.632, system: 0.029, elapsed: 2.734 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.487, system: 0.070, elapsed: 16.090 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.012, elapsed: 0.341 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.715, system: 0.178, elapsed: 6.390 seconds]
Computing values for grid cells...
... done. [user: 0.182, system: 0.006, elapsed: 0.303 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.763, system: 0.331, elapsed: 26.806 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.610, system: 0.031, elapsed: 2.927 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.450, system: 0.061, elapsed: 14.871 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.197, system: 0.012, elapsed: 0.352 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.718, system: 0.176, elapsed: 6.796 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.012, elapsed: 0.327 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.101, system: 0.249, elapsed: 1.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.913, system: 0.577, elapsed: 27.684 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.038, elapsed: 2.974 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.601, system: 0.177, elapsed: 16.598 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.193, system: 0.015, elapsed: 0.364 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.843, system: 0.240, elapsed: 6.799 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.006, elapsed: 0.253 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.926, system: 0.636, elapsed: 18.054 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.029, system: 1.147, elapsed: 46.208 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64