Last updated on 2025-03-09 02:52:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.3 | 5.72 | 212.64 | 218.36 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.2.0 | 4.74 | 190.02 | 194.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.2.0 | 495.56 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2.0 | 419.14 | OK | |||
| r-devel-macos-arm64 | 2.2.0 | 4.00 | ERROR | |||
| r-devel-macos-x86_64 | 2.2.0 | 247.00 | OK | |||
| r-devel-windows-x86_64 | 2.2.0 | 11.00 | 261.00 | 272.00 | OK | |
| r-patched-linux-x86_64 | 2.2.0 | 6.33 | 248.69 | 255.02 | OK | |
| r-release-linux-x86_64 | 2.1.3 | 5.76 | 199.28 | 205.04 | ERROR | |
| r-release-macos-arm64 | 2.2.0 | 9.00 | FAIL | |||
| r-release-macos-x86_64 | 2.2.0 | 296.00 | OK | |||
| r-release-windows-x86_64 | 2.2.0 | 9.00 | 306.00 | 315.00 | OK | |
| r-oldrel-macos-arm64 | 2.2.0 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 2.2.0 | 282.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.2.0 | 13.00 | 278.00 | 291.00 | OK |
Version: 2.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [150s/211s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TEST" = "")
> library(testthat)
> library(wallace)
Loading required package: shiny
Loading required package: leaflet
>
> test_check("wallace")
trying URL 'https://www.dropbox.com/sh/kijh17ehg8v3uv8/AADWJOs0_8zQmhc0XJxJE9a2a/bio%20%23baseline_Modern%281950-1999%29%23%20CCSM_LGM%2821ka%29.txt?dl=1'
Content type 'application/binary' length 86163749 bytes (82.2 MB)
==================================================
downloaded 82.2 MB
trying URL 'https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip'
Content type 'application/zip' length 49869449 bytes (47.6 MB)
==================================================
downloaded 47.6 MB
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
[ FAIL 4 | WARN 1 | SKIP 5 | PASS 191 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test_envs_ecoClimate.R:23:3', 'test_envs_ecoClimate.R:46:3',
'test_envs_worldclim.R:27:3', 'test_occs_queryDb.R:85:3',
'test_occs_queryDb.R:85:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_model_bioclim.R:17:1'): (code run outside of `test_that()`) ────
Error in `ENMeval::ENMevaluate(occs = occs.xy, envs = bgMsk, bg = bg.xy,
algorithm = "bioclim", partitions = "user", user.grp = user.grp)`: From this version of ENMeval, the package will only use "terra" raster data types. Please convert from "raster" to "terra" with terra::rast(r), where r is a RasterStack.
Backtrace:
▆
1. └─wallace::model_bioclim(occs, bg, partblock, envs) at test_model_bioclim.R:17:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::ENMevaluate(...)
── Error ('test_model_maxent.R:49:3'): (code run outside of `test_that()`) ─────
Error in `ENMeval::ENMevaluate(occs = as.data.frame(occs.xy), bg = as.data.frame(bg.xy),
partitions = "user", user.grp = user.grp, envs = bgMsk, tune.args = tune.args,
doClamp = clampSel, algorithm = algMaxent, categoricals = catEnvs,
parallel = parallel, numCores = numCores, parallelType = "doSNOW",
updateProgress = updateProgress, quiet = FALSE)`: unused argument (parallelType = "doSNOW")
Backtrace:
▆
1. └─wallace::model_maxent(...) at test_model_maxent.R:49:3
── Error ('test_part_partitionOccs.R:45:1'): (code run outside of `test_that()`) ──
Error: [spatSample] not yet implemented for these strata
Backtrace:
▆
1. └─wallace::part_partitionOccs(...) at test_part_partitionOccs.R:45:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::get.checkerboard1(occs.xy, bgMask, bg.xy, aggFact)
4. └─ENMeval::get.checkerboard(...)
5. ├─terra::spatSample(...)
6. └─terra::spatSample(...)
7. └─terra (local) .local(x, ...)
8. └─terra:::error("spatSample", "not yet implemented for these strata")
── Error ('test_vis_bioclimPlot.R:19:1'): (code run outside of `test_that()`) ──
Error in `ENMeval::ENMevaluate(occs = occs.xy, envs = bgMsk, bg = bg.xy,
algorithm = "bioclim", partitions = "user", user.grp = user.grp)`: From this version of ENMeval, the package will only use "terra" raster data types. Please convert from "raster" to "terra" with terra::rast(r), where r is a RasterStack.
Backtrace:
▆
1. └─wallace::model_bioclim(occs, bg, partblock, envs) at test_vis_bioclimPlot.R:19:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::ENMevaluate(...)
[ FAIL 4 | WARN 1 | SKIP 5 | PASS 191 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.2.0
Check: package dependencies
Result: ERROR
Package required and available but unsuitable version: ‘ENMeval’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-macos-arm64, r-oldrel-macos-arm64
Version: 2.1.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [141s/221s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> Sys.setenv("R_TEST" = "")
> library(testthat)
> library(wallace)
Loading required package: shiny
Loading required package: leaflet
>
> test_check("wallace")
trying URL 'https://www.dropbox.com/sh/kijh17ehg8v3uv8/AADWJOs0_8zQmhc0XJxJE9a2a/bio%20%23baseline_Modern%281950-1999%29%23%20CCSM_LGM%2821ka%29.txt?dl=1'
Content type 'application/binary' length 86163749 bytes (82.2 MB)
==================================================
downloaded 82.2 MB
trying URL 'https://geodata.ucdavis.edu/climate/worldclim/2_1/base/wc2.1_10m_bio.zip'
Content type 'application/zip' length 49869449 bytes (47.6 MB)
==================================================
downloaded 47.6 MB
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
Reading layer `Bassaricyon_neblina' from data source
`/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/wallace/extdata/shp/Bassaricyon_neblina.shp'
using driver `ESRI Shapefile'
Simple feature collection with 1 feature and 1 field
Geometry type: POLYGON
Dimension: XY
Bounding box: xmin: -79.47486 ymin: -1.15418 xmax: -74.50839 ymax: 6.83333
CRS: NA
[ FAIL 4 | WARN 1 | SKIP 5 | PASS 191 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
• On CRAN (5): 'test_envs_ecoClimate.R:23:3', 'test_envs_ecoClimate.R:46:3',
'test_envs_worldclim.R:27:3', 'test_occs_queryDb.R:85:3',
'test_occs_queryDb.R:85:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_model_bioclim.R:17:1'): (code run outside of `test_that()`) ────
Error in `ENMeval::ENMevaluate(occs = occs.xy, envs = bgMsk, bg = bg.xy,
algorithm = "bioclim", partitions = "user", user.grp = user.grp)`: From this version of ENMeval, the package will only use "terra" raster data types. Please convert from "raster" to "terra" with terra::rast(r), where r is a RasterStack.
Backtrace:
▆
1. └─wallace::model_bioclim(occs, bg, partblock, envs) at test_model_bioclim.R:17:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::ENMevaluate(...)
── Error ('test_model_maxent.R:49:3'): (code run outside of `test_that()`) ─────
Error in `ENMeval::ENMevaluate(occs = as.data.frame(occs.xy), bg = as.data.frame(bg.xy),
partitions = "user", user.grp = user.grp, envs = bgMsk, tune.args = tune.args,
doClamp = clampSel, algorithm = algMaxent, categoricals = catEnvs,
parallel = parallel, numCores = numCores, parallelType = "doSNOW",
updateProgress = updateProgress, quiet = FALSE)`: unused argument (parallelType = "doSNOW")
Backtrace:
▆
1. └─wallace::model_maxent(...) at test_model_maxent.R:49:3
── Error ('test_part_partitionOccs.R:45:1'): (code run outside of `test_that()`) ──
Error: [spatSample] not yet implemented for these strata
Backtrace:
▆
1. └─wallace::part_partitionOccs(...) at test_part_partitionOccs.R:45:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::get.checkerboard1(occs.xy, bgMask, bg.xy, aggFact)
4. └─ENMeval::get.checkerboard(...)
5. ├─terra::spatSample(...)
6. └─terra::spatSample(...)
7. └─terra (local) .local(x, ...)
8. └─terra:::error("spatSample", "not yet implemented for these strata")
── Error ('test_vis_bioclimPlot.R:19:1'): (code run outside of `test_that()`) ──
Error in `ENMeval::ENMevaluate(occs = occs.xy, envs = bgMsk, bg = bg.xy,
algorithm = "bioclim", partitions = "user", user.grp = user.grp)`: From this version of ENMeval, the package will only use "terra" raster data types. Please convert from "raster" to "terra" with terra::rast(r), where r is a RasterStack.
Backtrace:
▆
1. └─wallace::model_bioclim(occs, bg, partblock, envs) at test_vis_bioclimPlot.R:19:1
2. ├─wallace::smartProgress(...)
3. └─ENMeval::ENMevaluate(...)
[ FAIL 4 | WARN 1 | SKIP 5 | PASS 191 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.2.0
Check: package dependencies
Result: FAIL
Flavor: r-release-macos-arm64