RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification
Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.
| Version: | 2.1.0 |
| Depends: | R (≥ 3.6), GenomicRanges, GenomeInfoDb |
| Imports: | methods, e1071, extraDistr, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils |
| Suggests: | knitr, rmarkdown, markdown, Gviz, rtracklayer |
| Published: | 2023-03-29 |
| DOI: | 10.32614/CRAN.package.RTIGER |
| Author: | Rafael Campos-Martin
 [cre],
Sophia Schmickler [aut],
Manish Goel [ctb],
Korbinian Schneeberger [aut],
Achim Tresch [aut] |
| Maintainer: | Rafael Campos-Martin <rfael.mpi at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | RTIGER results |
Documentation:
| Reference manual: | RTIGER.pdf |
| Vignettes: |
tutorial_RTIGER (source, R code) |
Downloads:
| Package source: | RTIGER_2.1.0.tar.gz |
| Windows binaries: | r-devel: RTIGER_2.1.0.zip, r-release: RTIGER_2.1.0.zip, r-oldrel: RTIGER_2.1.0.zip |
| macOS binaries: | r-devel (arm64): RTIGER_2.1.0.tgz, r-release (arm64): RTIGER_2.1.0.tgz, r-oldrel (arm64): RTIGER_2.1.0.tgz, r-devel (x86_64): RTIGER_2.1.0.tgz, r-release (x86_64): RTIGER_2.1.0.tgz, r-oldrel (x86_64): RTIGER_2.1.0.tgz |
| Old sources: | RTIGER archive |
Linking:
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