Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) <doi:10.1093/bioinformatics/btv042>. For full functionality, the software 'ncbi-blast+' is needed, see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html> for more information.
Version: | 1.7-3 |
Depends: | R (≥ 3.0.2) |
Suggests: | knitr, rmarkdown, Biostrings, GOSemSim, foreach, doParallel, org.Hs.eg.db |
Published: | 2024-08-30 |
DOI: | 10.32614/CRAN.package.protr |
Author: | Nan Xiao |
Maintainer: | Nan Xiao <me at nanx.me> |
BugReports: | https://github.com/nanxstats/protr/issues |
License: | BSD_3_clause + file LICENSE |
URL: | https://nanx.me/protr/, https://github.com/nanxstats/protr, http://protr.org |
NeedsCompilation: | no |
SystemRequirements: | ncbi-blast+ (see <https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html>) |
Citation: | protr citation info |
Materials: | README NEWS |
CRAN checks: | protr results |
Reference manual: | protr.pdf |
Vignettes: |
protr: R package for generating various numerical representation schemes of protein sequences (source, R code) |
Package source: | protr_1.7-3.tar.gz |
Windows binaries: | r-devel: protr_1.7-2.zip, r-release: protr_1.7-3.zip, r-oldrel: protr_1.7-2.zip |
macOS binaries: | r-release (arm64): protr_1.7-3.tgz, r-oldrel (arm64): protr_1.7-3.tgz, r-release (x86_64): protr_1.7-3.tgz, r-oldrel (x86_64): protr_1.7-3.tgz |
Old sources: | protr archive |
Reverse imports: | HPiP, PredCRG, surfaltr |
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