Download and Extract Data from US EPA's ECOTOX Database

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Documentation for package ‘ECOTOXr’ version 1.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.cas	Functions for handling chemical abstract service (CAS) registry numbers
as.character.cas	Functions for handling chemical abstract service (CAS) registry numbers
as.data.frame.cas	Functions for handling chemical abstract service (CAS) registry numbers
as.double.cas	Functions for handling chemical abstract service (CAS) registry numbers
as.integer.cas	Functions for handling chemical abstract service (CAS) registry numbers
as.list.cas	Functions for handling chemical abstract service (CAS) registry numbers
as_date_ecotox	Values represented by ECOTOX 'character' to dates
as_numeric_ecotox	Values represented by ECOTOX 'character' to 'numeric'
as_unit_ecotox	Text from the ECOTOX database to 'mixed_units'
build_ecotox_sqlite	Build an SQLite database from zip archived tables downloaded from EPA website
c.cas	Functions for handling chemical abstract service (CAS) registry numbers
cas	Functions for handling chemical abstract service (CAS) registry numbers
check_ecotox_availability	Check whether a ECOTOX database exists locally
check_ecotox_build	Check the locally build database for validity
check_ecotox_version	Check if the locally build database is up to date
cite_ecotox	Cite the downloaded copy of the ECOTOX database
dbConnectEcotox	Open or close a connection to the local ECOTOX database
dbDisconnectEcotox	Open or close a connection to the local ECOTOX database
download_ecotox_data	Download and extract ECOTOX database files and compose database
format.cas	Functions for handling chemical abstract service (CAS) registry numbers
get_ecotox_info	Get information on the local ECOTOX database when available
get_ecotox_path	The local path to the ECOTOX database (directory or sqlite file)
get_ecotox_sqlite_file	The local path to the ECOTOX database (directory or sqlite file)
get_ecotox_url	Get ECOTOX download URL from EPA website
is.cas	Functions for handling chemical abstract service (CAS) registry numbers
list_ecotox_fields	List the field names that are available from the ECOTOX database
list_ecotox_web_fields	Search and retrieve toxicity records from the online database
mixed_to_single_unit	Convert mixed units to a specific unit
print.cas	Functions for handling chemical abstract service (CAS) registry numbers
process_ecotox_dates	Process ECOTOX search results by converting 'character' to dates where relevant
process_ecotox_numerics	Process ECOTOX search results by converting 'character' to 'numeric' where relevant
process_ecotox_units	Process ECOTOX search results by converting 'character' to units where relevant
search_ecotox	Search and retrieve toxicity records from the database
search_ecotox_lazy	Search and retrieve toxicity records from the database
search_query_ecotox	Search and retrieve toxicity records from the database
show.cas	Functions for handling chemical abstract service (CAS) registry numbers
websearch_comptox	Search and retrieve substance information from <https://comptox.epa.gov/dashboard>
websearch_ecotox	Search and retrieve toxicity records from the online database
[.cas	Functions for handling chemical abstract service (CAS) registry numbers
[<-.cas	Functions for handling chemical abstract service (CAS) registry numbers
[[.cas	Functions for handling chemical abstract service (CAS) registry numbers
[[<-.cas	Functions for handling chemical abstract service (CAS) registry numbers