# Topological Data Analysis: Mapper Algorithm

## Documentation for package ‘MapperAlgo’ version 1.0.6

- DESCRIPTION file.

## Help Pages

cluster_cutoff_at_first_empty_bin | Cut the hierarchical clustering tree to define clusters
cover_points | Cover points based on intervals and overlap
CPEmbedding | Conditional Probability Embedding for Mapper Nodes
find_best_k_for_kmeans | Find the optimal number of clusters for k-means
GridSearch | GridSearch searched over a list of interval width and overlap, useful for visualizing the convergence of the Mapper.
MapperAlgo | Mapper Algorithm
MapperCorrelation | Visualizes the correlation between two Mapper colorings.
mapperEdges | Create Mapper Edges
MapperPlotter | Plot Mapper Result
mapperVertices | Create Mapper Vertices
perform_clustering | Perform clustering within a level set
save_mapper_png | GridSearch searched over a list of interval width and overlap, useful for visualizing the convergence of the Mapper.
simplcial_complex | Construct adjacency matrix of the simplicial complex
to_lsfi | Convert level set multi-index (lsmi) to flat index (lsfi)
to_lsmi | Convert level set flat index (lsfi) to multi-index (lsmi)