Inference for Hidden Markov and Semi-Markov Models
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Documentation for package ‘mhsmm’ version 0.4.21
Help Pages
| addStates | Adds a bar representing state sequence. |
| createTransition | Smoothing a discrete time series. |
| dmvnorm.hsmm | Emission ensity function for a multivariate normal emission distribution |
| dnorm.hsmm | Emission density function for normal emission distribution |
| dpois.hsmm | Emission density function for Poisson emission distribution |
| gammafit | Parameter estimation for the Gamma distribution |
| hmmfit | fit a hidden Markov model |
| hmmspec | Specificatin of HMMs |
| hsmmfit | fit a hidden semi-Markov model |
| hsmmspec | Hidden semi-Markov model specification |
| mstep.mvnorm | Performs re-estimation (the M-step) for a multivariate normal emission distribution |
| mstep.norm | Performs re-estimation (the M-step) for a normal emission distribution |
| mstep.pois | Performs re-estimation (the M-step) for a Poisson emission distribution |
| plot.hsmm | Plot function for hsmms |
| plot.hsmm.data | Plot function for hsmm data |
| predict.hmm | Prediction function for hmm |
| predict.hmmspec | Prediction function for hmmspec |
| predict.hsmm | Prediction for hsmms |
| predict.hsmmspec | Prediction for hsmmspec |
| predict.smoothDiscrete | Smoothing a discrete time series. |
| print.hmm | Print method for hmm objects |
| print.hmmspec | Print function for hmmspec |
| print.hsmmspec | Print function for hsmmspec |
| print.smoothDiscrete | Smoothing a discrete time series. |
| reproai | Artificial insemination times for seven cows |
| reprocows | Reproductive data from seven dairy cows |
| reproppa | Observed lengths of post-partum anoestrus for 73 dairy cows |
| rmvnorm.hsmm | Random number generation from a multivariate normal distributed emission distribution |
| rnorm.hsmm | Random number generation from a normally distributed emission distribution |
| rpois.hsmm | Random number generation from a Poisson distributed emission distribution |
| sim.mc | Markov chain simulation |
| simulate.hmmspec | Simulation of hidden Markov models |
| simulate.hsmmspec | Simulation for HSMMs |
| smooth.discrete | Smoothing a discrete time series. |
| summary.hmm | Summary method for hmm objects |
| summary.hsmm | Summary function for hsmm |
| summary.smoothDiscrete | Smoothing a discrete time series. |