Spatial Phylogenetic Analysis

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Documentation for package ‘phylospatial’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

benefit	Calculate taxon conservation benefit
moss	Load California moss spatial phylogenetic data
phylospatial	Create a spatial phylogenetic object
plot.phylospatial	Plot a 'phylospatial' object
plot_lambda	Plot alternative lambda values
ps_add_dissim	Add community dissimilarity data to a 'phylospatial' object
ps_canape	Categorical Analysis of Neo- and Paleo-Endemism (CANAPE)
ps_canaper	Binary randomization tests including CANAPE
ps_dissim	Quantitative phylogenetic dissimilarity
ps_diversity	Calculate spatial phylogenetic diversity and endemism metrics
ps_get_comm	Get 'phylospatial' community data
ps_ordinate	Community phylogenetic ordination
ps_prioritize	Phylogenetic conservation prioritization
ps_rand	Null model randomization analysis of alpha diversity metrics
ps_regions	Cluster analysis to identify phylogenetic regions
ps_regions_eval	Evaluate region numbers
ps_rgb	Map phylospatial data onto RGB color bands
ps_simulate	Simulate a toy spatial phylogenetic data set
quantize	Stratified randomization of community matrix
to_spatial	Convert a site-by-variable matrix into a SpatRaster or sf object