Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

---

Documentation for package ‘SerolyzeR’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

create_standard_curve_model_analyte	Create a standard curve model for a certain analyte
generate_levey_jennings_report	Generate a Levey-Jennings Report for Multiple Plates.
generate_plate_report	Generate a report for a plate.
get_nmfi	Calculate normalised MFI values for a plate
handle_high_dose_hook	Detect and handle the high dose hook effect
is_valid_data_type	Check validity of given data type
is_valid_sample_type	Check validity of given sample type
Model	Logistic regression model for the standard curve
Plate	Plate object
PlateBuilder	PlateBuilder
plot_counts	Plot counts in a 96-well plate
plot_layout	Plot layout of a 96-well plate
plot_levey_jennings	Plot Levey-Jennings chart
plot_mfi_for_analyte	Plot MFI value distribution for a given analyte
plot_standard_curve_analyte	Standard curves
plot_standard_curve_analyte_with_model	Plot standard curve of a certain analyte with fitted model
plot_standard_curve_stacked	Standard curve stacked plot for levey-jennings report
predict.Model	Predict the RAU values from the MFI values
process_dir	Process a dir of files to generate normalised data and reports
process_file	Process a file to generate normalised data and reports
process_plate	Process a plate and save output values to a CSV
read_intelliflex_format	Read the Intelliflex format data
read_layout_data	Read layout data from a file
read_luminex_data	Read Luminex Data
read_xponent_format	Read the xPONENT format data
translate_sample_names_to_sample_types	Translate sample names to sample types