Modeling Multivariate Origins Determinants - Evolutionary
Lineages in Ecology
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Documentation for package ‘mmodely’ version 0.2.5
Help Pages
| average.fit.models | Calculate a weighted average of pglm |
| calc.q2n.ratio | Calculate the ratio of fit predictor variables to sample size |
| cept | Include all variables except ... |
| comp.data | Comparative Data |
| compare.data.gs.vs.tree.tips | Find data being dropped by mismatches to the tree |
| correct.AIC | Correct AIC |
| count.mod.vars | Count the predictor variables in a model |
| ct.possible.models | Count all possible model combinations |
| drop.na.data | Drop any rows with NA values |
| fit.1ln.rprt | Report a model fit in a single line of text output |
| get.mod.clmns | Get model columns |
| get.mod.outcome | Get the outcome variable from a model string |
| get.mod.vars | Get model variable names |
| get.model.combos | All combinations of predictor variables |
| get.pgls.coefs | Get coeficients from a list of PGLS model-fits (from each selected subset) |
| get.phylo.stats | Get tree statistics for a trait |
| gs.check | Check "Genus species" name formatting |
| gs.names.mismatch.check | Check "Genus species" name formatting |
| gs.rename | Rename the Genus species information in a data frame |
| interpolate | Interpolate missing data in a data frame |
| missing.data | Report missing values in a dataframe |
| missing.fill.in | Fill in missing values in a dataframe with a secondary source |
| pgls.iter | Iterate through PGLS estimations |
| pgls.iter.stats | Statistics from PGLS runs |
| pgls.print | Print the results of a PGLS model fit |
| pgls.report | Report PGLS results as a table |
| pgls.wrap | A Wrapper for PGLS model |
| plot.confound.grid | Plot a grid of x y plots split by a confounder z |
| plot.pgls.iters | Plot the PGLS iterations |
| plot.pgls.R2AIC | Plot (R2 vs AIC) results of a collection of fit PGLS models |
| plot.transformed.phylo | Plot a transformed phylogenetic tree |
| plot.xy.ab.p | An x/y scatterplot with a linear regression line and p-value |
| select.best.models | Get the best model from list of PGLS model fits |
| sparge.modsel | Coeficients distribution [sparge] plot of models selected from each subset |
| trim.phylo | Trim a phylogenetic tree using Genus species names |
| variable.importance | Calculate a weighted average of pglm |
| weight.IC | Get IC weights |