Statistical Tools for Immune Correlates Analysis of Vaccine Clinical Trial Data

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Documentation for package ‘vaccine’ version 1.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_table	Create table of estimates
diagnostics	Run diagnostics
est_ce	Estimate controlled effect curves
est_med	Estimate mediation effects
est_overall	Estimate overall risk and vaccine efficacy
hvtn505	HVTN 505 Dataset
load_data	Load and format data object
params_ce_cox	Set parameters controlling Cox model estimation of controlled effect curves
params_ce_np	Set parameters controlling nonparametric estimation of controlled effect curves
params_med_np	Set parameters controlling nonparametric estimation of mediation effects
plot_ce	Plotting controlled effect curves
summary_stats	Calculate summary statistics
trim	Trim data for plotting/reporting