# Open Population Capture-Recapture

## Documentation for package ‘openCR’ version 2.2.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

openCR-package | Open Population Capture-Recapture Models
age.matrix | Session-specific Ages
AIC.openCR | Compare openCR Models
AIC.openCRlist | Compare openCR Models
bd.array | Summarise Non-spatial Open-population Data
classMembership | Class Membership Probability for Mixture Models
classMembership.openCR | Class Membership Probability for Mixture Models
cloned.fit | Cloning to Evaluate Identifiability
collate | Array of Parameter Estimates
collate.openCR | Array of Parameter Estimates
collate.openCRlist | Array of Parameter Estimates
cumMove | Probability Distribution After Movement
cyclic.fit | Internal Functions
derived.openCR | Derived Parameters From openCR Models
derived.openCRlist | Derived Parameters From openCR Models
dipperCH | Dippers
dkernel | Kernel Distribution Functions
expected.d | Expected Distance Moved
extractFocal | Moving Window Functions
FebpossumCH | Orongorongo Valley Brushtail Possums
fieldvoleCH | Kielder Field Voles
gkernel | Kernel Distribution Functions
gonodontisCH | Gonodontis Moths
JS.counts | Summarise Non-spatial Open-population Data
JS.direct | Jolly-Seber Estimates
LLsurface | Plot Likelihood Surface
LLsurface.openCR | Plot Likelihood Surface
logLik.openCR | Compare openCR Models
m.array | Summarise Non-spatial Open-population Data
make.kernel | Discrete Movement Kernel
make.table | Tabulate Estimates From Multiple Models
makeNewData | Create Default Design Data
makeNewData.openCR | Create Default Design Data
matchscale | Match Kernel
microtusCH | Patuxent Meadow Voles
microtusFCH | Patuxent Meadow Voles
microtusFMCH | Patuxent Meadow Voles
microtusMCH | Patuxent Meadow Voles
microtusRDCH | Patuxent Meadow Voles
modelAverage | Averaging of OpenCR Models Using Akaike's Information Criterion
modelAverage.openCR | Averaging of OpenCR Models Using Akaike's Information Criterion
modelAverage.openCRlist | Averaging of OpenCR Models Using Akaike's Information Criterion
Movement models | List of Movement Models
moving.fit | Moving Window Functions
openCR | Open Population Capture-Recapture Models
openCR-defunct | Defunct Functions in Package 'openCR'
openCR-deprecated | Deprecated Functions in Package 'openCR'
openCR.design | Design Data for Open population Models
openCR.esa | Derived Parameters From openCR Models
openCR.fit | Fit Open Population Capture-Recapture Model
openCR.make.newdata | Defunct Functions in Package 'openCR'
openCR.pdot | Derived Parameters From openCR Models
openCRlist | Bundle openCR Models
par.openCR.fit | Fit Multiple openCR Models
PCH1 | Internal Functions
PCH1secr | Internal Functions
pkernel | Kernel Distribution Functions
plot.derivedopenCR | Plot Derived Estimates
plot.kernel | Discrete Movement Kernel
plot.openCR | Plot Estimates
plotKernel | Defunct Functions in Package 'openCR'
pradelloglik | Internal Functions
predict.openCR | openCR Model Predictions
predict.openCRlist | openCR Model Predictions
primarysessions | Data Manipulation
print.derivedopenCR | Print Method for Derived Estimates
print.openCR | Print or Summarise openCR Object
proportionInPolygon | Probability Distribution After Movement
prwi | Internal Functions
prwisecr | Internal Functions
qkernel | Kernel Distribution Functions
read.inp | Import Data from RMark Input Format
rev.capthist | Reverse Primary Sessions
runsim.nonspatial | Simulate Capture Histories
runsim.RMark | Simulate Capture Histories
runsim.spatial | Simulate Capture Histories
secondarysessions | Data Manipulation
sim.nonspatial | Simulate Capture Histories
squeeze | Unique Capture Histories
strata | Stratum names
strata<- | Stratum names
stratify | Stratify Capture-Recapture Data
summary.kernel | Discrete Movement Kernel
summary.openCR | Print or Summarise openCR Object
sumsims | Simulate Capture Histories
ucare.cjs | Goodness-of-fit tests for the Cormack-Jolly-Seber model
unsqueeze | Unique Capture Histories
[.openCRlist | Bundle openCR Models