A Toolkit for Archetypal Analysis Methods

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Documentation for package ‘yaap’ version 1.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

aa_init	Archetypal Analysis Initialization Functions
AIC.archetypes	AIC for archetypes objects
anames	Archetype names
anames.archetypes	Archetype names
anames<-	Archetype names
anames<-.archetypes	Archetype names
archetypes_directional	Directional Archetypal Analysis
archetypes_kernel_pgd	Kernel Archetypal Analysis using Projected Gradient Descent
archetypes_nnls	Archetypal Analysis using Non-Negative Least Squares
archetypes_paa	Probabilistic Archetypal Analysis using Projected Gradient Descent
archetypes_path	Fit an Archetypes Path Across K
archetypes_path.default	Fit an Archetypes Path Across K
archetypes_path.formula	Fit an Archetypes Path Across K
archetypes_pgd	Archetypes Analysis using Projected Gradient Descent
augment.archetypes	Augment data with composition weights from an archetypes model
augment.kernel_archetypes	Augment data with composition weights from an archetypes model
coefficients.archetypes	Coefficients for archetypes objects
compositions	Access archetype coordinates and compositions
compositions.archetypes	Access archetype coordinates and compositions
consistency	Consistency Between Archetypal Analysis Fits
consistency.archetypes	Consistency Between Archetypal Analysis Fits
coordinates	Access archetype coordinates and compositions
coordinates.archetypes	Access archetype coordinates and compositions
fitted.archetypes	Fitted values for archetypes objects
fit_simplex	Fit Data to Convex Hull defined by Archetypes
glance.archetypes	Glance at an archetypes model
glance.kernel_archetypes	Glance at an archetypes model
onehot	One-hot encode a vector
onehot.character	One-hot encode a vector
onehot.default	One-hot encode a vector
onehot.factor	One-hot encode a vector
plot.archetypes	Plot method for archetypes objects
plot_archetypes_compositions	Composition Plot For Archetypes
plot_archetypes_coordinates	Coordinate Plot For Archetypes
plot_archetypes_loss	Loss Plot For Archetypes
plot_archetypes_profiles	Profile Plot For Archetypes
predict.archetypes	Predict compositions or reconstructions for new data from an archetypes model
predict.directional_archetypes	Predict compositions or reconstructions for directional archetypes
predict.kernel_archetypes	Predict method for kernel archetypes
proj_l1	Project rows of matrix onto the probability simplex
proj_simplex	Project rows of matrix onto the probability simplex
residuals.archetypes	Residuals for archetypes objects
residuals.kernel_archetypes	Residuals for kernel archetypes objects
run_aa	Run Archetypal Analysis
run_aa.default	Run Archetypal Analysis
run_aa.fd	Run Archetypal Analysis
run_aa.formula	Run Archetypal Analysis
screeplot.archetypes_path	Scree Plot for an Archetypes Path
simplex_projection	Project rows of matrix onto the probability simplex
step_archetypes	Archetypal Analysis Preprocessing Step for recipes
tidy.archetypes	Tidy an archetypes model
tidy.kernel_archetypes	Tidy an archetypes model