Streamline Population Genomic and Genetic Analyses


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Documentation for package ‘PopGenHelpR’ version 1.0.0

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Dif_stats A function to calculate differentiation statistics and perform significance testing with a vcf file.
Dif_Stats_Map A function to map differentiation statistics.
Div_stats A function to estimate heterozygosity and the number of private alleles from a vcf file.
Div_Stats_Map A function to map diversity statistics.
Fst_dat A genetic differentiation matrix and locality information for each population. This data was generated by subsetting data of Farleigh et al., 2021.
Het_dat A data frame of hypothetical heterozygosity data produced by Div_Stats.
Pairwise_heatmap A function to plot a heatmap from a symmetric matrix.
Plot_ancestry Plot an ancestry matrix and map of ancestry pie charts.
Q_dat A list representing a q-matrix and the locality information associated with the qmatrix