CGC_20211118            COSMIC-CGC genes mapped to PathwaySpace images
Hallmarks_v2023_1_Hs_symbols
                        A list with Hallmark gene sets (v2023.1)
PCv12_pruned_igraph     A pruned and laid out igraph object from
                        Pathway Commons V12
PathwaySpace-accessors
                        Accessor Functions for PathwaySpace Objects
PathwaySpace-class      PathwaySpace: An S4 class for signal projection
                        on image spaces
SpaceProjection-class   Projection Data Container for PathwaySpace
                        Objects
annotation_pspace_signal
                        Annotation Functions for PathwaySpace Plots
buildPathwaySpace       Constructor of PathwaySpace-class Objects
circularProjection,PathwaySpace-method
                        Circular Projection of Graph-Associated Signals
expDecay                Constructor of exponential decay functions
getNearestNode          getNearestNode
getPathwaySpace,PathwaySpace-method
                        Accessors for Fetching Slots from a
                        PathwaySpace Object
gimage                  An image matrix
linearDecay             Constructor of linear decay functions
pathDistances           Calculate a pathway space distance between two
                        vectors
plotPathDistances       Accessory function to plot pathway space
                        distances
plotPathwaySpace,PathwaySpace-method
                        Plotting 2D-landscape images for the
                        PathwaySpace package
polarDecay              Polar transformation functions
polarProjection,PathwaySpace-method
                        Polar Projection of Graph-Associated Signals
pspace.cols             A simple vector of colors for PathwaySpace
                        images
pspace.pals             Create interpolated color palettes for
                        PathwaySpace images
signalAggregation       Signal aggregation functions
silhouetteMapping,PathwaySpace-method
                        Decorating PathwaySpace Images with Graph
                        Silhouettes
summitMapping,PathwaySpace-method
                        Mapping Summits on PathwaySpace Images
summitWatershed         Variation of the watershed algorithm for summit
                        detection
updatePathwaySpace,PathwaySpace-method
                        Update a PathwaySpace object
vertexSignal-accessors
                        Accessor Functions for PathwaySpace Objects
weibullDecay            Constructor of Weibull decay functions
