# A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics

## Documentation for package ‘RGraphSpace’ version 1.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A C E G I N P S T U misc

## -- A --

annotation_gspace | Annotate a GraphSpace Plot with an Image
annotation_gspace_image | Annotate a GraphSpace Plot with an Image
as.GraphSpace | Convert objects to GraphSpace
as.GraphSpace.data.frame | Convert objects to GraphSpace
as.GraphSpace.default | Convert objects to GraphSpace
as.GraphSpace.igraph | Convert objects to GraphSpace
as.GraphSpace.Seurat | Convert objects to GraphSpace
as.GraphSpace.tbl_graph | Convert objects to GraphSpace
as.igraph.GraphSpace | Accessors and attribute utilities for GraphSpace objects
as_colorraster | Map numeric values to a color raster

## -- C --

cropGraphSpace | Normalize node coordinates to graph and image spaces
cropGraphSpace-method | Normalize node coordinates to graph and image spaces

## -- E --

edgespace_handler | Draw edge elements in a 2D graph layout

## -- G --

GeomEdgeSpace | GeomEdgeSpace: a ggplot2 prototype for GraphSpace-class methods
GeomNodeSpace | GeomNodeSpace: a ggplot2 prototype for GraphSpace-class methods
geom_edgespace | Draw edge elements in a 2D graph layout
geom_graphspace | Convenience wrapper for node and edge geoms
geom_nodespace | Draw node elements in a 2D graph layout
getGraphSpace | Accessors for fetching slots from a GraphSpace object
getGraphSpace-method | Accessors for fetching slots from a GraphSpace object
ggplot-GraphSpace | Using ggplot2 with GraphSpace objects
ggplot.GraphSpace | Using ggplot2 with GraphSpace objects
GraphSpace | Create a GraphSpace object
GraphSpace-accessors | Accessors and attribute utilities for GraphSpace objects
GraphSpace-class | GraphSpace: An S4 class for igraph objects
GraphSpace-method | Create a GraphSpace object
GraphSpace-subscript | Subscript operators for GraphSpace objects
gs_add_edges | Add edges to a GraphSpace object
gs_add_edges-method | Add edges to a GraphSpace object
gs_add_edges<- | Add edges to a GraphSpace object
gs_add_edges<--method | Add edges to a GraphSpace object
gs_add_features | Manipulate node features in a GraphSpace object
gs_add_nodes | Add nodes to a GraphSpace object
gs_add_nodes-method | Add nodes to a GraphSpace object
gs_add_nodes<- | Add nodes to a GraphSpace object
gs_add_nodes<--method | Add nodes to a GraphSpace object
gs_ecount | Accessors and attribute utilities for GraphSpace objects
gs_ecount-method | Accessors and attribute utilities for GraphSpace objects
gs_edges | Accessors and attribute utilities for GraphSpace objects
gs_edges-method | Accessors and attribute utilities for GraphSpace objects
gs_edge_attr | Accessors and attribute utilities for GraphSpace objects
gs_edge_attr-method | Accessors and attribute utilities for GraphSpace objects
gs_edge_attr<- | Accessors and attribute utilities for GraphSpace objects
gs_edge_attr<--method | Accessors and attribute utilities for GraphSpace objects
gs_fdata | Accessors and attribute utilities for GraphSpace objects
gs_fdata-method | Accessors and attribute utilities for GraphSpace objects
gs_fdata<- | Accessors and attribute utilities for GraphSpace objects
gs_fdata<--method | Accessors and attribute utilities for GraphSpace objects
gs_features | Accessors and attribute utilities for GraphSpace objects
gs_features-method | Accessors and attribute utilities for GraphSpace objects
gs_features-utils | Manipulate node features in a GraphSpace object
gs_fetch_features | Manipulate node features in a GraphSpace object
gs_graph | Accessors and attribute utilities for GraphSpace objects
gs_graph-method | Accessors and attribute utilities for GraphSpace objects
gs_image | Accessors and attribute utilities for GraphSpace objects
gs_image-method | Accessors and attribute utilities for GraphSpace objects
gs_image<- | Accessors and attribute utilities for GraphSpace objects
gs_image<--method | Accessors and attribute utilities for GraphSpace objects
gs_image_toy | Toy 'GraphSpace' object
gs_names | Accessors and attribute utilities for GraphSpace objects
gs_names-method | Accessors and attribute utilities for GraphSpace objects
gs_nfeatures | Accessors and attribute utilities for GraphSpace objects
gs_nfeatures-method | Accessors and attribute utilities for GraphSpace objects
gs_nodes | Accessors and attribute utilities for GraphSpace objects
gs_nodes-method | Accessors and attribute utilities for GraphSpace objects
gs_subset | Filter nodes and edges in a GraphSpace object
gs_subset_edges | Filter nodes and edges in a GraphSpace object
gs_subset_nodes | Filter nodes and edges in a GraphSpace object
gs_vcount | Accessors and attribute utilities for GraphSpace objects
gs_vcount-method | Accessors and attribute utilities for GraphSpace objects
gs_vertex_attr | Accessors and attribute utilities for GraphSpace objects
gs_vertex_attr-method | Accessors and attribute utilities for GraphSpace objects
gs_vertex_attr<- | Accessors and attribute utilities for GraphSpace objects
gs_vertex_attr<--method | Accessors and attribute utilities for GraphSpace objects
gtoy1 | Toy 'igraph' objects
gtoy2 | Toy 'igraph' objects
gtoys | Toy 'igraph' objects

## -- I --

inject_nodespace | Dynamic Scale Injection for Edge Clipping

## -- N --

names | Accessors and attribute utilities for GraphSpace objects
names-method | Accessors and attribute utilities for GraphSpace objects
nodespace_handler | Draw node elements in a 2D graph layout
normalizeGraphSpace | Normalize node coordinates to graph and image spaces
normalizeGraphSpace-method | Normalize node coordinates to graph and image spaces

## -- P --

plot.GraphSpace | Plot GraphSpace objects
plotGraphSpace | Wrapper function to plot GraphSpace objects in ggplot2
plotGraphSpace-method | Wrapper function to plot GraphSpace objects in ggplot2

## -- S --

StatEdgeSpace | Attribute Processing for GeomEdgeSpace
StatNodeSpace | Attribute Processing for GeomNodeSpace
summary-method | Summarise a GraphSpace object

## -- T --

theme_gspace | RGraphSpace ggplot2 themes
theme_gspace_coords | RGraphSpace ggplot2 themes
theme_gspace_legend | RGraphSpace ggplot2 themes
theme_gspace_th0 | RGraphSpace ggplot2 themes
theme_gspace_th1 | RGraphSpace ggplot2 themes
theme_gspace_th2 | RGraphSpace ggplot2 themes
theme_gspace_th3 | RGraphSpace ggplot2 themes

## -- U --

updateGraphSpace | Update a GraphSpace object
updateGraphSpace-method | Update a GraphSpace object

## -- misc --

$-method | Accessors and attribute utilities for GraphSpace objects
$<--method | Accessors and attribute utilities for GraphSpace objects
[-method | Subscript operators for GraphSpace objects
[[-method | Subscript operators for GraphSpace objects
[[<--method | Accessors and attribute utilities for GraphSpace objects