Similarity Network Fusion
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘SNFtool’ version 2.3.1
Help Pages
| affinityMatrix | Affinity matrix calculation |
| calNMI | Mutual Information calculation |
| chiDist2 | Pairwise Chi-squared distances |
| concordanceNetworkNMI | Concordance Network NMI calculation |
| Data1 | Data1 |
| Data2 | Data2 |
| dataL | dataL |
| displayClusters | Plot given similarity matrix by clusters |
| displayClustersWithHeatmap | Display the similarity matrix by clusters with some sample information |
| dist2 | Pairwise squared Euclidean distances |
| estimateNumberOfClustersGivenGraph | Estimate Number Of Clusters Given Graph |
| getColorsForGroups | Obtaining a vector of colors from a numeric vector of group |
| groupPredict | Group Predict |
| heatmapPlus | Display heatmap for clusters |
| label | Labels for dataL dataset |
| plotAlluvial | Plot Alluvial |
| rankFeaturesByNMI | Rank Features by NMI |
| SNF | Similarity Network Fusion |
| spectralClustering | Spectral Clustering |
| standardNormalization | Standard Normalization |