Package: priorityelasticnet
Type: Package
Title: Comprehensive Analysis of Multi-Omics Data Using an Offset-Based
        Method
Version: 1.2.1
Authors@R: c(
    person(given = "Laila Qadir", family = "Musib", role = c("aut"), 
           email = "statleila98@gmail.com"),
    person(given = "Helena", family = "Mouriño", role = c("aut"), 
           email = "mhnunes@ciencias.ulisboa.pt"),
    person(given = "Eunice", family = "Carrasquinha", role = c("aut", "cre"), 
           email = "eitrigueirao@ciencias.ulisboa.pt")
    )
Description: Priority-ElasticNet extends the Priority-LASSO method (Klau et al. (2018) <doi:10.1186/s12859-018-2344-6>) by incorporating the ElasticNet penalty, allowing for both L1 and L2 regularization. 
    This approach fits successive ElasticNet models for several blocks of (omics) data with different priorities, using the predicted values from each block as an offset for the subsequent block. 
    It also offers robust options to handle block-wise missingness in multi-omics data, improving the flexibility and applicability of the model in the presence of incomplete datasets.
Note: conceptual foundation and significant code structure inherited
        from the 'prioritylasso' package.
License: GPL-3
Depends: R (>= 3.5.0)
Imports: survival, glmnet (>= 2.0-13), utils, checkmate, shiny, tidyr,
        dplyr, caret, pROC, PRROC, plotrix, ggplot2, magrittr, tibble,
        broom, cvms, glmSparseNet
Suggests: ipflasso, rlang, knitr, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-02-11 10:57:42 UTC; eunicecarrasquinha
Author: Laila Qadir Musib [aut],
  Helena Mouriño [aut],
  Eunice Carrasquinha [aut, cre]
Maintainer: Eunice Carrasquinha <eitrigueirao@ciencias.ulisboa.pt>
Repository: CRAN
Date/Publication: 2026-02-19 09:30:02 UTC
Built: R 4.4.3; ; 2026-03-12 18:04:18 UTC; windows
