Custom Slot Getters and Setters
                        Getter and Setter functions for
                        'TapestriExperiment' slots
PCAKneePlot             Plot of PCA proportion of variance explained
TapestriExperiment-class
                        TapestriExperiment Class Definition
assayBoxPlot            Generate a box plot from assay data
assayHeatmap            Generate heatmap of assay data
calcCopyNumber          Calculate relative copy number value for each
                        cell-probe unit using reference sample
calcGMMCopyNumber       Call copy number for each cell-chromosome using
                        Gaussian mixture models
calcNormCounts          Normalize raw counts
calcSmoothCopyNumber    Smooth copy number values across chromosomes
                        and chromosome arms
callSampleLables        Call sample labels based on feature counts
corner                  Print the top-left corner of a matrix
countBarcodedReads      Get read counts from barcoded reads
createTapestriExperiment
                        Create 'TapestriExperiment' object from
                        Tapestri Pipeline output
getChrOrder             Get chromosome order from a string of
                        chromosome/contig names
getCytobands            Add chromosome cytobands and chromosome arms to
                        'TapestriExperiment'
getGMMBoundaries        Calculate decision boundaries between
                        components of copy number GMMs
getTidyData             Get tidy-style data from 'TapestriExperiment'
                        objects
moveNonGenomeProbes     Move non-genome probes counts and metadata to
                        altExp slots
newTapestriExperimentExample
                        Create Example 'TapestriExperiment'
plotCopyNumberGMM       Plot copy number GMM components
reducedDimPlot          Scatter plot for dimensional reduction results
runClustering           Cluster 2D data
runPCA                  Cluster assay data by Principal Components
                        Analysis
runUMAP                 Cluster matrix data by UMAP
