Models for Correlation Matrices Based on Graphs
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Documentation for package ‘graphpcor’ version 0.1.15
- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
Help Pages
| basecor | Information for a base model for correlation matrices |
| basecor-class | Information for a base model for correlation matrices |
| basecor-utils | Internal functions used by basecor |
| basecor.matrix | Information for a base model for correlation matrices |
| basecor.numeric | Information for a base model for correlation matrices |
| basepcor | Information for a base model for correlation matrices |
| basepcor-class | Information for a base model for correlation matrices |
| basepcor.matrix | Information for a base model for correlation matrices |
| basepcor.numeric | Information for a base model for correlation matrices |
| cgeneric.graphpcor | graphpcor: correlation from nodes and edges |
| cgeneric.matrix | graphpcor: correlation from nodes and edges |
| cgeneric.treepcor | treepcor: correlation from tree |
| cgeneric_graphpcor | Build an 'cgeneric' for a graph, see 'graphpcor()' |
| cgeneric_LKJ | Build an 'cgeneric' model for the LKG prior on correlation matrix. |
| cgeneric_pc_correl | Build an 'cgeneric' object to implement the PC prior, proposed on Simpson et. al. (2007), as an informative prior, see details in 'basecor()'. |
| cgeneric_pc_prec_correl | Build an 'cgeneric' object to implement the PC-prior of a precision matrix as inverse of a correlation matrix. |
| cgeneric_treepcor | Build an 'cgeneric' for 'treepcor()') |
| cgeneric_Wishart | Build an 'cgeneric' to implement the Wishart prior for a precision matrix. |
| cholcor | Internal functions used by basecor |
| dim.graphpcor | graphpcor: correlation from nodes and edges |
| dim.treepcor | treepcor: correlation from tree |
| dLKJ | The LKJ density for a correlation matrix |
| drop1-method | treepcor: correlation from tree |
| dtheta | Internal functions to map between Euclidean and spherical coordinates |
| edges-method | graphpcor: correlation from nodes and edges |
| edges-method | treepcor: correlation from tree |
| etreepcor2precision | treepcor: correlation from tree |
| etreepcor2variance | treepcor: correlation from tree |
| fillLprec | Function to fill-in a Cholesky matrix |
| graphpcor | graphpcor: correlation from nodes and edges |
| graphpcor-class | graphpcor: correlation from nodes and edges |
| graphpcor.formula | graphpcor: correlation from nodes and edges |
| graphpcor.matrix | graphpcor: correlation from nodes and edges |
| Hcorrel | Internal functions used by basecor |
| hessian.graphpcor | Evaluate the hessian of the KLD for a 'graphpcor' correlation model around a base model. |
| KLD10 | Compute the KLD between two multivariate Gaussian distributions, assuming equal mean vector |
| Laplacian | The Laplacian of a graph |
| Laplacian.default | The Laplacian of a graph |
| Laplacian.graphpcor | graphpcor: correlation from nodes and edges |
| Laplacian.matrix | The Laplacian of a graph |
| Lprec0 | Compute the (lower triangle) Cholesky of the initial precision 'Q0'. |
| param-utils | Internal functions to map between Euclidean and spherical coordinates |
| plot-method | graphpcor: correlation from nodes and edges |
| plot-method | treepcor: correlation from tree |
| prec.graphpcor | graphpcor: correlation from nodes and edges |
| prec.treepcor | treepcor: correlation from tree |
| print.basecor | Information for a base model for correlation matrices |
| print.basepcor | Information for a base model for correlation matrices |
| print.graphpcor | graphpcor: correlation from nodes and edges |
| print.treepcor | treepcor: correlation from tree |
| rphi2x | Internal functions to map between Euclidean and spherical coordinates |
| rtheta | Internal functions to map between Euclidean and spherical coordinates |
| summary.graphpcor | graphpcor: correlation from nodes and edges |
| summary.treepcor | treepcor: correlation from tree |
| treepcor | treepcor: correlation from tree |
| treepcor-class | treepcor: correlation from tree |
| vcov-method | graphpcor: correlation from nodes and edges |
| vcov-method | treepcor: correlation from tree |
| x2rphi | Internal functions to map between Euclidean and spherical coordinates |