Package: pctax
Type: Package
Title: Professional Comprehensive Omics Data Analysis
Version: 0.1.7
Authors@R: person("Chen", "Peng", email ="bfzede@gmail.com", role = c("aut", "cre"), comment =
           c(ORCID = "0000-0002-9449-7606"))
Description: Provides a comprehensive suite of tools for analyzing omics data. It includes
           functionalities for alpha diversity analysis, beta diversity analysis, differential
           abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
           functional enrichment analysis. With a progressive approach, the package offers a range of
           analysis methods to explore and understand the complex communities. It is designed to
           support researchers and practitioners in conducting in-depth and professional omics data
           analysis.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.2.0)
LazyData: true
Imports: pcutils (>= 0.2.5), dplyr, readr, ggplot2 (>= 3.2.0), vegan,
        magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats,
        tibble, utils, ggpubr, patchwork, ggnewscale, ade4, scales
Suggests: picante, httr, NST, permute, aplot, ggfun, pheatmap, MASS,
        Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest,
        plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW,
        tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma,
        ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown,
        MetaNet, showtext, jsonlite, prettydoc, readxl, stringr,
        ggExtra, clipr, zetadiv, ggforce, gggenes, mediation
VignetteBuilder: knitr
BugReports: https://github.com/Asa12138/pctax/issues
URL: https://github.com/Asa12138/pctax
ByteCompile: true
biocViews: Microbiome, Software, Visualization
NeedsCompilation: no
Packaged: 2026-02-09 07:45:40 UTC; asa
Author: Chen Peng [aut, cre] (ORCID: <https://orcid.org/0000-0002-9449-7606>)
Maintainer: Chen Peng <bfzede@gmail.com>
Repository: CRAN
Date/Publication: 2026-02-09 08:20:08 UTC
Built: R 4.5.2; ; 2026-03-06 14:18:00 UTC; windows
