25b16b7681c564e5938ab1221611a64f *DESCRIPTION
eb33ac5f8f672c5285e9176bcff37bfb *NAMESPACE
8e7734a9db3dd29fbbee616aef16f8c5 *R/HMMscpg-package.R
7ef44e3acd3665e35f38c45ffc24bb5e *R/RcppExports.R
de9841830aa5f5d16b5b464a370d882d *R/WBsum.R
056c50c3eaabca3a67b83ef8aff17106 *R/asy.coeff.R
ab434ca8c85b5d0fa224ad6a16233d3e *R/dscpg.R
8c2bb9ccfe486b7346b00bc8e92d9201 *R/fit.hmm.scpg.R
1b57510f9f141f7ff23d62c34497422d *R/fit.hsmm.scpg.R
7cd852ab015f1547949724a52d3296e8 *R/fit.ihmm.scpg.R
df9350d955d86a61c5fbdcf8fb6c0ea5 *R/fit.ihsmm.scpg.R
549ae84a0438db9bed50b38920a9c27b *R/fit.scpg.R
75441118d6021e948d7ce79c787a78fa *R/hmm.scpg.R
18fd4b03cbbaa29f5d3c18a007475cd6 *R/hsmm.scpg.R
df55157957f487705b1fc5ccb2476997 *R/ihmm.scpg.R
90c8d877968fd238a2b766202e4618b2 *R/ihsmm.scpg.R
ab5b5f36fbb8c1aef099732a074807a6 *R/inflection.R
e7a8fc80cbbf4b602e43a48ba6b40b70 *R/pscpg.R
7642b57f57036a413e633607570bcc82 *R/qscpg.R
8113ea2b4af2e8447f2ed21ec888a7a9 *R/rdpack-imports.R
35352d9b1212a8b9df27fdbe89d4ad43 *R/rscpg.R
fbfb4e2ace50db231da17de642c153da *R/shared.R
3c1044ec63472cfcd92040260664c630 *R/shared.scpg.R
97cb181c32d83128b4c9087fb291bc00 *R/sim.hmm.scpg.R
b7357d65ea41830f4862a829c86f386f *R/sim.hsmm.scpg.R
478c507435d14a867363928ff4360bdd *R/sim.ihmm.scpg.R
3ee6e8472d7c02d3ff2c32d1cb900ba5 *R/sim.ihsmm.scpg.R
afd7a73b577fe6ab21dfc2c86e36449f *R/sp.hmm.scpg.R
2b827dc21ef9e0abd18514c93e8c79b5 *R/sp.hsmm.scpg.R
e2ff960768c097d45c35c52c29e100b8 *R/sp.ihmm.scpg.R
d884dd2de68ce879d166897f50a44ff8 *R/sp.ihsmm.scpg.R
5429175732e251ed005c8a88dcc9ef8d *R/vip.hmm.scpg.R
17cc1907c43b429b862a4aace820651a *R/vip.hsmm.scpg.R
a341de2905561ebc02162bce871e98c9 *R/vip.ihmm.scpg.R
1ee9af1bd648b025387eed2fe41fd29c *R/vip.ihsmm.scpg.R
db36eb7c7298d993bcf4181b52786b85 *build/partial.rdb
29fe362ca454691f239f896812d42845 *inst/REFERENCES.bib
b3f067c54b2bdd6be63b2df11819c9d4 *inst/WORDLIST
f10e5be5f73c1ed9bcbf839d0e6e439e *inst/examples/d_scpg.R
9be7e830d0818cb660f67d2d293e5513 *inst/examples/d_tscpg.R
61b011f893f3669783b59e567881dc93 *inst/examples/fit_hmm_scpg.R
51ad61f0b636fb61e5813411bc78126d *inst/examples/fit_hmm_scpg_m3.R
bc81bcffe509ebd5aca5a7ef06fdb19c *inst/examples/fit_hmm_tscpg.R
bdf513583c10d3181ea7e1d5d1ca1ef8 *inst/examples/fit_hmm_tscpg_m3.R
5d17f930382d8f3609241ff1552f1b55 *inst/examples/fit_hsmm_scpg.R
4999207f83a23d85ccb97bc70dbdbb85 *inst/examples/fit_hsmm_scpg_m3.R
0728057138bda5a27cd48cece90d5c43 *inst/examples/fit_hsmm_tscpg.R
ed7f0d05b3a9e228f065d9ca3b32c2e7 *inst/examples/fit_hsmm_tscpg_m3.R
e3e99e04dc9a30bcd0eb4b677793be4e *inst/examples/fit_ihmm_scpg.R
4cde7c5134f3ea56ee74fe8481c98f03 *inst/examples/fit_ihmm_scpg_m3.R
0f250b7b85715da64f89f615d2c1deb2 *inst/examples/fit_ihmm_tscpg.R
3f1eefd5eb7590b3ffe56f7e2fe83995 *inst/examples/fit_ihmm_tscpg_m3.R
4d005250380d0fc1f88525e01b059d45 *inst/examples/fit_ihsmm_scpg.R
676005d74cf33561b31bf7d2318f5345 *inst/examples/fit_ihsmm_scpg_m3.R
43fc8290e743fe997c1eb3de8d971971 *inst/examples/fit_ihsmm_tscpg.R
1222cf6b4f8d3d98038ea9cae0dfcee6 *inst/examples/fit_ihsmm_tscpg_m3.R
da688a1c6bae03cbe2b1c4f53f802b0b *inst/examples/fit_scpg.R
ad5f4f71ad2d22f2abadf534e003c6f0 *inst/examples/fit_tscpg.R
6aa6b90967ce5ded81b20ed9037ad820 *inst/examples/hmm_scpg.R
75f8f97df049d9a8937013171e31394d *inst/examples/hmm_scpg_m3.R
43631613e7f58ae279cc1f952fb2ffe0 *inst/examples/hmm_tscpg.R
8a17501636bec392a77c866f7a23d213 *inst/examples/hmm_tscpg_m3.R
88ca2f9ef842429aa963c15105479de9 *inst/examples/hsmm_scpg.R
8d2640f3373ce8d85d3b55f7942b9fed *inst/examples/hsmm_scpg_m3.R
94bb83550595585eccbd9b86bf7f231d *inst/examples/hsmm_tscpg.R
4130698b8b85c7c843a427e524d7e221 *inst/examples/hsmm_tscpg_m3.R
57b7981e913de7f5ad63ebb528c36f8f *inst/examples/ihmm_scpg.R
a15e6871c98cac3ba20c4cb5dd337b52 *inst/examples/ihmm_scpg_m3.R
674ce2cdf6740f7d3bb30da982b596bb *inst/examples/ihmm_tscpg.R
122c04ece1f2c166ccbe9aae8c871e54 *inst/examples/ihmm_tscpg_m3.R
1717f42262eaab661f98399526383ef6 *inst/examples/ihsmm_scpg.R
2b901817a0ad088dc9d3142b575e96ee *inst/examples/ihsmm_scpg_m3.R
f02ca14072393eb68529e3a79c9d5283 *inst/examples/ihsmm_tscpg.R
b82e91bceba8634809d1be86a8109fcf *inst/examples/ihsmm_tscpg_m3.R
58b83ca9e99c057be34451827c7eb585 *inst/examples/infl_hmm_tscpg.R
f2cbd5f834929d6d4881e3ac3fc2f4ce *inst/examples/infl_hmm_tscpg_m3.R
93b1317a3eb6cad354e2ec1e528e069d *inst/examples/infl_hsmm_tscpg.R
a4047322b5a12e44dc441139bd0a20df *inst/examples/infl_hsmm_tscpg_m3.R
7bb85d3688b02dddac7864a6a6a3ba10 *inst/examples/infl_ihmm_scpg.R
8a53849645bc24dd6a6675d50e89c0be *inst/examples/infl_ihmm_scpg_m3.R
ed5fbe378fc6f3d743ad2de851269d7b *inst/examples/infl_ihmm_tscpg.R
f495c9df77f9b7cdf42f6a102437cffa *inst/examples/infl_ihmm_tscpg_m3.R
349a64d8e263ded1a4b8d0e456d68d22 *inst/examples/infl_ihsmm_scpg.R
286c46261578c7448ef4c4dff1f8010b *inst/examples/infl_ihsmm_scpg_m3.R
307925341c25b4aa14457f891ff032c6 *inst/examples/infl_ihsmm_tscpg.R
419dcb7d75dd0dacd7d89a813d092af7 *inst/examples/infl_ihsmm_tscpg_m3.R
bfe50c042a1bb3b585962edf120f1d1c *inst/examples/p_scpg.R
430ea5ba3209f04b99c4a329576a1f81 *inst/examples/p_tscpg.R
8fbf6f23583c9a454924d6c465a38242 *inst/examples/q_scpg.R
8ac2bc3a779316581f645d8d7935d445 *inst/examples/q_tscpg.R
c8cd8a0215d57adb60d7a5df1badb5ec *inst/examples/sim_hmm_scpg.R
59e19d1d255330f93e2282e1fb12b8e9 *inst/examples/sim_hmm_scpg_m3.R
a973b59dba610e00d794ecc626793fb0 *inst/examples/sim_hmm_tscpg.R
bb5fb070bd220b57a9a0d171cc17de54 *inst/examples/sim_hmm_tscpg_m3.R
fc371abfcf93b32c43a1e9171e52fe71 *inst/examples/sim_hsmm_scpg.R
9bdebc61d9bfa2ff08fa45e89d7ee940 *inst/examples/sim_hsmm_scpg_m3.R
2447e40aad49de33df671e88569128e1 *inst/examples/sim_hsmm_tscpg.R
ab1b9346131e3a44389ca46822003600 *inst/examples/sim_hsmm_tscpg_m3.R
e5ab6092fe067ba2eb43e6bb4a9faea6 *inst/examples/sim_ihmm_scpg.R
ea832885691ce9f79b47a3256db96694 *inst/examples/sim_ihmm_scpg_m3.R
6dba3ed0dd3dfbff6ac326cc16f3afeb *inst/examples/sim_ihmm_tscpg.R
618390e53b2b58bf924d8c065eb9a551 *inst/examples/sim_ihmm_tscpg_m3.R
5be7a4b7134875f6bd0706dc949f737f *inst/examples/sim_ihsmm_scpg.R
238781cc2d0d6c3e2c6f080b26900f65 *inst/examples/sim_ihsmm_scpg_m3.R
4200cfc3978b206225236ea3598adc69 *inst/examples/sim_ihsmm_tscpg.R
63415cad5caa45c9bb8e8f676633e67e *inst/examples/sim_ihsmm_tscpg_m3.R
0a0a6e8f817b8e53b4c5fdae861ce659 *inst/examples/sim_scpg.R
5af60f514527686526132f633e0c51cb *inst/examples/sim_tscpg.R
9ce72b72fa150447905e4a36ffc8b57e *inst/examples/sp_hmm_tscpg.R
650681e6b1639d24a3e081773bbb85ca *inst/examples/sp_hmm_tscpg_m3.R
ea351bcd0c22a5ba858a089384bd0a3c *inst/examples/sp_hsmm_scpg.R
2737e93f2b1693cc50f9ae90d4768780 *inst/examples/sp_hsmm_scpg_m3.R
9187d7c5100aaec66d5c2eaab2f449f3 *inst/examples/sp_hsmm_tscpg.R
c3f05850d99c3aa382c872d22e243d68 *inst/examples/sp_hsmm_tscpg_m3.R
05e661e84d5de045f644818515226163 *inst/examples/sp_ihmm_scpg.R
658ceca7344a95e24811e2b1f4b20156 *inst/examples/sp_ihmm_scpg_m3.R
d534af06e949042fb4ea052f3c714493 *inst/examples/sp_ihmm_tscpg.R
32bb272b0ce52b989d4bc9d065caef22 *inst/examples/sp_ihmm_tscpg_m3.R
968f0948d2fac81fb8391c67741c05d0 *inst/examples/sp_ihsmm_scpg.R
5940716c4c54ae70c9520e383ade8af1 *inst/examples/sp_ihsmm_scpg_m3.R
c19df83aee1eb8686257f1a02a996544 *inst/examples/sp_ihsmm_tscpg.R
64fcb5718da9461254797a22adc832d0 *inst/examples/sp_ihsmm_tscpg_m3.R
e9d0d59d8ce3c1f6ca3438a9bb014c00 *inst/examples/verify_WBsum.R
77d02186938ee9cca835bb4e8a93347c *inst/examples/verify_dscpg.R
20a6b72b985e4e7de414df79a73499c3 *inst/examples/verify_fit_hmm_scpg.R
d7d1a79f19ea4799b414ae3dbce21cb9 *inst/examples/verify_fit_hsmm_scpg.R
1824fd0e43508ded8d2f6b7a9ccbcf63 *inst/examples/verify_fit_ihmm_scpg.R
22a21e1935c67bf2d109029d70832f29 *inst/examples/verify_fit_ihsmm_scpg.R
68c75b510ea155b06d935b5087158ff2 *inst/examples/verify_fit_scpg.R
3207f8208ce1568ade70bcf743172a41 *inst/examples/vip_hmm_scpg.R
3c5ae27d53107eefa658cdbf060306f4 *inst/examples/vip_hmm_scpg_m3.R
9ee51465aa0c3528c7c875991a9681d8 *inst/examples/vip_hsmm_scpg.R
840a710167583f4883309d9839d154b4 *inst/examples/vip_hsmm_scpg_m3.R
b614eb716ef30edd4a63b55abd0571e4 *inst/examples/vip_hsmm_tscpg.R
bd0541340699dbe7fb1c12b38af1debb *inst/examples/vip_hsmm_tscpg_m3.R
893a6e94d8dbb254c720db2ce13f098a *inst/examples/vip_ihmm_scpg.R
ba3b8fa0d22bcdf2718999703612cb1b *inst/examples/vip_ihmm_scpg_m3.R
52dfcd12718a0e0d17f6e6ae3c3a2365 *inst/examples/vip_ihmm_tscpg.R
142fe33e63e3799a83161646187eec42 *inst/examples/vip_ihmm_tscpg_m3.R
75fc229f4e6ee2f427098f9f7bfcb4cc *inst/examples/vip_ihsmm_scpg.R
6951b369b3a67368c88bc8dd66489c7a *inst/examples/vip_ihsmm_scpg_m3.R
55a87c1fb8fb8e5fe54758010164a453 *inst/examples/vip_ihsmm_tscpg.R
43c426eb93f74904678e291391563112 *inst/examples/vip_ihsmm_tscpg_m3.R
2ee47cef6f2934b96b22140e7e96f8fc *man/HMMscpg-package.Rd
77616c87a455d06ef0dc5af4240353ba *man/WBsum.Rd
16f67cab32243fa3f5d4dc78fcc85bca *man/dscpg.Rd
5c204512b544c471c407a9db89ad9011 *man/fit.hmm.scpg.Rd
e570d329db0427d9661c06b3827f9daa *man/fit.hsmm.scpg.Rd
3f3ecd975dbc887be2b6620c00152d08 *man/fit.ihmm.scpg.Rd
27b1670a1a6ac444e355adeeaf170e29 *man/fit.ihsmm.scpg.Rd
ebed81d5ee02cedf8411e7e843410a3a *man/fit.scpg.Rd
b9c97cb1c23540fda011240c56be8fe5 *man/hmm.scpg.Rd
2a4145e01f5d0757b9d158ddb6173a27 *man/hsmm.scpg.Rd
2dd79a5f93f015fae51f362eaa3effda *man/ihmm.scpg.Rd
b9df6947373be92246366414a4cedca8 *man/ihsmm.scpg.Rd
da1dd647535901bb2bcccac1f52e9d57 *man/pscpg.Rd
b9caaa2614c35b1f85a07ba519812289 *man/qscpg.Rd
6c72025afdf3c2c0c234e5eeee9c0459 *man/rscpg.Rd
738f122a6d5076ff1162ef341316400b *man/sim.hmm.scpg.Rd
948fc6e935e0c4cde40f91849d49e9d8 *man/sim.hsmm.scpg.Rd
8594c0b59f2e6d9ceed54b996bd2d20d *man/sim.ihmm.scpg.Rd
1026fba6838a9a4a798f912ab0562bc0 *man/sim.ihsmm.scpg.Rd
3af7962c559302c8d7977a6c697bce70 *man/sp.hmm.scpg.Rd
20bbfa60e3cff98d322320cab7f6944e *man/sp.hsmm.scpg.Rd
4d6dbce4e4aa176c3eee349aa4f01bd6 *man/sp.ihmm.scpg.Rd
1b71ca2cfa776ee4a9240e3fb1e4190f *man/sp.ihsmm.scpg.Rd
ba72ef1b0f723c846de4c820bbdf9955 *man/vip.hmm.scpg.Rd
0fe3cb97b3dc578fd87e7709b9144afc *man/vip.hsmm.scpg.Rd
211538176920a73b92806ecc42aaa5ea *man/vip.ihmm.scpg.Rd
377f30b26602d9fd21d1d4d57b5eda0e *man/vip.ihsmm.scpg.Rd
699dd530d400faa4a82862ccd7d1ae03 *src/RcppExports.cpp
9a0d06e0d37be5f747ada7ace3e078d0 *src/iloop.cpp
f75d91a51a0889ae34f0402e5faad6bd *src/loop.cpp
