# Generated by roxygen2: do not edit by hand

S3method(boxplot,Data)
S3method(plot,Data)
S3method(plot,Fleet)
S3method(plot,Hist)
S3method(plot,Imp)
S3method(plot,MMSE)
S3method(plot,MSE)
S3method(plot,OM)
S3method(plot,Obs)
S3method(plot,Stock)
S3method(plot,character)
S3method(plot,pars)
S3method(predict,Rel)
S3method(print,Rel)
S3method(print,multiHist)
S3method(simulate,Rel)
export(AAVE)
export(AAVY)
export(ASAP2Data)
export(ASAP2OM)
export(Assess2MOM)
export(Assess2OM)
export(Awatea2OM)
export(BAM2MOM)
export(CALsimp)
export(COSEWIC_Blow)
export(COSEWIC_Dplot)
export(COSEWIC_Hplot)
export(COSEWIC_Pplot)
export(COSEWIC_report)
export(COSEWIC_tab)
export(COSEWIC_tab_formatted)
export(CSRA)
export(CalcAsymptoticDist)
export(Can)
export(Cant)
export(CheckOM)
export(ChkYrs)
export(ChooseEffort)
export(ChooseM)
export(ChooseSelect)
export(Converge)
export(Cos_thresh_tab)
export(Cplot)
export(DFO_bar)
export(DFO_hist)
export(DFO_plot)
export(DFO_plot2)
export(DFO_proj)
export(DFO_quant)
export(DFO_report)
export(DFO_spider)
export(DFO_tab)
export(DFO_tab_formatted)
export(DLMDataDir)
export(DLMdiag)
export(Data2csv)
export(DataDir)
export(DataInit)
export(Data_xl)
export(Dom)
export(Emp)
export(FMSYref)
export(FMSYref50)
export(FMSYref75)
export(Fease)
export(Input)
export(Kplot)
export(LH2OM)
export(LTY)
export(Lag_Data)
export(ML2D)
export(MOM_agg_fleets)
export(MPtype)
export(MPurl)
export(MSEextra)
export(NAor0)
export(NFref)
export(NOAA_plot)
export(NOAA_plot2)
export(Needed)
export(OMdoc)
export(OMexample)
export(OMinit)
export(OneRep)
export(P10)
export(P100)
export(P50)
export(PGK)
export(PMLimit)
export(PMObj)
export(PNOF)
export(PWhisker)
export(Pplot)
export(Pplot2)
export(Project)
export(ProjectMOM)
export(R0conv)
export(RealFease)
export(Replace)
export(Report)
export(Required)
export(SRalphaconv)
export(SRbetaconv)
export(SS2Data)
export(SS2DataMOM)
export(SS2MOM)
export(SS2OM)
export(SSBrefplot)
export(SSMOM2OM)
export(STY)
export(SampleCpars)
export(SampleFleetPars)
export(SampleImpPars)
export(SampleObsPars)
export(SampleStockPars)
export(Sense)
export(Simulate)
export(SimulateMOM)
export(SketchFun)
export(Splot)
export(Sub)
export(SubCpars)
export(SubOM)
export(TAC)
export(TACfilter)
export(Thresh_tab)
export(Tplot)
export(Tplot2)
export(Tplot3)
export(TradePlot)
export(Turing)
export(TuringMOM)
export(Uses)
export(VOI)
export(VOI2)
export(VOIplot)
export(VPA2OM)
export(WHAM2OM)
export(XL2Data)
export(XL2Fleet)
export(XL2OM)
export(XL2Stock)
export(Yield)
export(addMMPs)
export(addMPs)
export(alphaconv)
export(applyMP)
export(avail)
export(betaconv)
export(calcMean)
export(calcProb)
export(checkMSE)
export(curEref)
export(cv)
export(derive_beta_par)
export(doHCR)
export(doIfreq)
export(doRec)
export(fetch.file.names)
export(getmov2)
export(getnIVs)
export(getsel)
export(hconv)
export(hist2)
export(iSCAM2Data)
export(iSCAM2OM)
export(iSCAMcomps)
export(iSCAMinds)
export(joinData)
export(joinHist)
export(joinMSE)
export(join_plots)
export(load.iscam.files)
export(makeMOM)
export(makeRel)
export(makeTransparent)
export(makemov)
export(makemov2)
export(mconv)
export(movestockCPP)
export(movfit_Rcpp)
export(multiDataS)
export(multiMSE)
export(multidebug)
export(optCPU)
export(optMSY_eq)
export(plotFun)
export(plotOFL)
export(plotRel)
export(plot_SS2MOM)
export(plot_SS2OM)
export(plot_mov)
export(plotmulti)
export(plotquant)
export(predictLH)
export(quantile_plot)
export(read.control.file)
export(read.data.file)
export(read.mcmc)
export(read.par.file)
export(read.projection.file)
export(read.report.file)
export(replic8)
export(runCOSEWIC)
export(runInMP)
export(runMP)
export(runMSE)
export(sample_steepness2)
export(sdconv)
export(select_MP)
export(setup)
export(simmov)
export(simmov2)
export(smoothy)
export(tdlnorm)
export(tinyErr)
export(trlnorm)
export(tune_MP)
export(updateMSE)
export(validcpars)
export(wormplot)
exportClasses(Data)
exportClasses(Fleet)
exportClasses(Imp)
exportClasses(MMSE)
exportClasses(MOM)
exportClasses(OM)
exportClasses(Obs)
exportClasses(Stock)
exportClasses(char.log)
exportClasses(label.class)
exportClasses(prob.class)
exportMethods(SubCpars)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
exportMethods(tinyErr)
importFrom(Rcpp,evalCpp)
importFrom(abind,abind)
importFrom(dplyr,
  "%>%",
  all_of,
  arrange,
  bind_rows,
  filter,
  group_by,
  left_join,
  mutate,
  pull,
  select,
  summarise,
  summarize
)
importFrom(ggplot2,
  aes,
  element_blank,
  expand_limits,
  facet_wrap,
  geom_boxplot,
  geom_line,
  geom_point,
  geom_rect,
  ggplot,
  ggplotGrob,
  guide_legend,
  guides,
  labs,
  theme,
  theme_bw,
  theme_classic,
  xlab,
  xlim,
  ylab,
  ylim
)
importFrom(grDevices,
  col2rgb,
  colorRampPalette,
  dev.new,
  dev.off,
  gray,
  jpeg,
  png,
  rainbow,
  rgb,
  xy.coords
)
importFrom(graphics,
  abline,
  arrows,
  axTicks,
  axis,
  barplot,
  boxplot,
  contour,
  grid,
  hist,
  identify,
  layout,
  legend,
  lines,
  matplot,
  mtext,
  par,
  plot,
  plot.new,
  points,
  polygon,
  segments,
  text,
  title
)
importFrom(grid,
  grid.draw,
  grid.newpage,
  unit,
  unit.c
)
importFrom(methods,
  "slot<-",
  .hasSlot,
  formalArgs,
  getClassDef,
  getSlots,
  is,
  new,
  show,
  slot,
  slotNames
)
importFrom(parallel,detectCores)
importFrom(stats,
  SSasympOff,
  acf,
  aggregate,
  approx,
  coef,
  cor,
  dbeta,
  density,
  dlnorm,
  dnorm,
  lm,
  loess,
  loess.smooth,
  median,
  na.pass,
  nlm,
  nlminb,
  nls,
  optim,
  optimise,
  optimize,
  plogis,
  pnorm,
  predict,
  qlnorm,
  qnorm,
  quantile,
  rbeta,
  rlnorm,
  rmultinom,
  rnorm,
  runif,
  sd,
  setNames,
  simulate,
  weighted.mean,
  window
)
importFrom(utils,
  browseURL,
  capture.output,
  combn,
  find,
  flush.console,
  ls.str,
  lsf.str,
  packageVersion,
  read.csv,
  read.csv2,
  setTxtProgressBar,
  str,
  txtProgressBar
)
useDynLib(MSEtool)
