CRAN Package Check Results for Package Characterization

Last updated on 2025-05-08 01:50:58 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	2.1.3	6.49	122.49	128.98	OK
r-devel-linux-x86_64-debian-gcc	2.1.3	3.92	95.50	99.42	OK
r-devel-linux-x86_64-fedora-clang	2.1.3			199.62	ERROR
r-devel-linux-x86_64-fedora-gcc	2.1.3			204.85	ERROR
r-devel-windows-x86_64	2.1.3	8.00	170.00	178.00	OK
r-patched-linux-x86_64	2.1.3	6.61	114.96	121.57	OK
r-release-linux-x86_64	2.1.3	5.96	114.43	120.39	OK
r-release-macos-arm64	2.1.3			98.00	OK
r-release-macos-x86_64	2.1.3			133.00	OK
r-release-windows-x86_64	2.1.3	8.00	172.00	180.00	OK
r-oldrel-macos-arm64	2.1.3			150.00	OK
r-oldrel-macos-x86_64	2.1.3			138.00	OK
r-oldrel-windows-x86_64	2.1.3	9.00	197.00	206.00	OK

Check Details

Version: 2.1.3
Check: tests
Result: ERROR Running ‘testthat.R’ [81s/130s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("Characterization") Loading required package: Characterization Removing values less than 5 from val Removing values less than 50 from val Removing values less than 5 from val Removing values less than 5 from val and val2 Removing values less than 5 from val and val2 Removing values less than 5 from val3 Constructing features on server Fetching data from server Fetching data took 2.63 secs Constructing features on server Fetching data from server Fetching data took 1.08 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Censoring num_exposure_eras counts less than 9999 Censoring num_persons_exposed counts less than 9999 Censoring num_cases counts less than 9999 Censoring/removing dechallenge_attempt counts less than 9999 Censoring/removing DECHALLENGE FAIL or SUCCESS counts less than 9999 Censoring/removing rechallenge_attempt counts less than 9999 Censoring/removing rechallenge_fail or rechallenge_success counts less than 9999 Constructing features on server Fetching data from server Fetching data took 1.42 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.04 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.15 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.63 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.05 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.13 secs Constructing during cohort covariates | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |========= | 12% | |============ | 17% | |=============== | 21% | |================== | 25% | |==================== | 29% | |======================= | 33% | |========================== | 38% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |====================================== | 54% | |========================================= | 58% | |============================================ | 62% | |=============================================== | 67% | |================================================== | 71% | |==================================================== | 75% | |======================================================= | 79% | |========================================================== | 83% | |============================================================= | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Removing num_events less than 1e+06 Censoring num_exposure_eras counts less than 1e+06 Censoring num_persons_exposed counts less than 1e+06 Censoring num_cases counts less than 1e+06 Censoring/removing dechallenge_attempt counts less than 1e+06 Censoring/removing DECHALLENGE FAIL or SUCCESS counts less than 1e+06 Censoring/removing rechallenge_attempt counts less than 1e+06 Censoring/removing rechallenge_fail or rechallenge_success counts less than 1e+06 Constructing features on server Fetching data from server Fetching data took 1.09 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.04 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Removing num_events less than 9999 Constructing features on server Fetching data from server Fetching data took 1.32 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.4 secs Constructing during cohort covariates | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |========= | 12% | |============ | 17% | |=============== | 21% | |================== | 25% | |==================== | 29% | |======================= | 33% | |========================== | 38% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |====================================== | 54% | |========================================= | 58% | |============================================ | 62% | |=============================================== | 67% | |================================================== | 71% | |==================================================== | 75% | |======================================================= | 79% | |========================================================== | 83% | |============================================================= | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Creating characterization results tables Migrating data set Migrator using SQL files in Characterization Creating migrations table Migrations table created Executing migration: Migration_1-v0_3_0_store_version.sql Saving migration: Migration_1-v0_3_0_store_version.sql Migration complete Migration_1-v0_3_0_store_version.sql Executing migration: Migration_2-v2_1_1_mean_exposure_time_type.sql Saving migration: Migration_2-v2_1_1_mean_exposure_time_type.sql Migration complete Migration_2-v2_1_1_mean_exposure_time_type.sql Closing database connection Updating version number - Preparing to upload rows 1 through 102 Uploading data took 4.4 secs [ FAIL 12 | WARN 29 | SKIP 7 | PASS 180 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • not run locally (7): 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-aggregateCovariate.R:391:3'): computeTargetAggregateCovariateAnalyses ── Error in `connection_valid(dbObj@ptr)`: no slot of name "ptr" for this object of class "CovariateData" Backtrace: ▆ 1. └─Characterization:::computeTargetAggregateCovariateAnalyses(...) at test-aggregateCovariate.R:391:3 2. └─Characterization:::exportAndromedaToCsv(...) 3. ├─andromeda$analysisRef 4. └─andromeda$analysisRef 5. ├─x[[name]] 6. └─x[[name]] 7. └─Andromeda (local) .local(x, i, ...) 8. └─Andromeda:::checkIfValid(x) 9. └─Andromeda::isValidAndromeda(x) 10. ├─duckdb::dbIsValid(x) 11. └─duckdb::dbIsValid(x) 12. └─RSQLite:::connection_valid(dbObj@ptr) ── Error ('test-aggregateCovariate.R:473:3'): computeCaseAggregateCovariateAnalyses ── Error in `connection_valid(dbObj@ptr)`: no slot of name "ptr" for this object of class "CovariateData" Backtrace: ▆ 1. └─Characterization:::computeCaseAggregateCovariateAnalyses(...) at test-aggregateCovariate.R:473:3 2. └─Characterization:::exportAndromedaToCsv(...) 3. ├─andromeda$analysisRef 4. └─andromeda$analysisRef 5. ├─x[[name]] 6. └─x[[name]] 7. └─Andromeda (local) .local(x, i, ...) 8. └─Andromeda:::checkIfValid(x) 9. └─Andromeda::isValidAndromeda(x) 10. ├─duckdb::dbIsValid(x) 11. └─duckdb::dbIsValid(x) 12. └─RSQLite:::connection_valid(dbObj@ptr) ── Error ('test-manualData.R:234:3'): manual data runCharacterizationAnalyses ── Error in `file(file, "rt")`: cannot open the connection Backtrace: ▆ 1. └─utils::read.csv(file.path(tempdir(), "result", "c_cohort_counts.csv")) at test-manualData.R:234:3 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ── Error ('test-manualData.R:496:3'): manual data checking exclude count works ── Error in `file(file, "rt")`: cannot open the connection Backtrace: ▆ 1. └─utils::read.csv(file.path(tempdir(), "result2", "c_cohort_counts.csv")) at test-manualData.R:496:3 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ── Failure ('test-runCharacterization.R:141:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_cohort_details.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:144:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_settings.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:147:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_analysis_ref.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:150:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariate_ref.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:153:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariates.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:156:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariates_continuous.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:403:3'): min cell count works ────────── file.exists(file.path(tempFolder, "result_mincell", "c_cohort_counts.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Error ('test-runCharacterization.R:406:3'): min cell count works ──────────── Error: '/tmp/RtmpGWAneY/working_dir/RtmpNUifKL/CharacterizationMin5855d761c12d4/result_mincell/c_cohort_counts.csv' does not exist. Backtrace: ▆ 1. ├─readr::read_csv(file.path(tempFolder, "result_mincell", "c_cohort_counts.csv")) at test-runCharacterization.R:406:3 2. │ └─vroom::vroom(...) 3. │ └─vroom:::vroom_(...) 4. └─vroom (local) `<fn>`("/tmp/RtmpGWAneY/working_dir/RtmpNUifKL/CharacterizationMin5855d761c12d4/result_mincell/c_cohort_counts.csv") 5. └─vroom:::check_path(path) [ FAIL 12 | WARN 29 | SKIP 7 | PASS 180 ] Error: Test failures In addition: Warning message: call dbDisconnect() when finished working with a connection Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.1.3
Check: tests
Result: ERROR Running ‘testthat.R’ [81s/117s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("Characterization") Loading required package: Characterization Removing values less than 5 from val Removing values less than 50 from val Removing values less than 5 from val Removing values less than 5 from val and val2 Removing values less than 5 from val and val2 Removing values less than 5 from val3 Constructing features on server Fetching data from server Fetching data took 1.56 secs Constructing features on server Fetching data from server Fetching data took 1.19 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Censoring num_exposure_eras counts less than 9999 Censoring num_persons_exposed counts less than 9999 Censoring num_cases counts less than 9999 Censoring/removing dechallenge_attempt counts less than 9999 Censoring/removing DECHALLENGE FAIL or SUCCESS counts less than 9999 Censoring/removing rechallenge_attempt counts less than 9999 Censoring/removing rechallenge_fail or rechallenge_success counts less than 9999 Constructing features on server Fetching data from server Fetching data took 1.09 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.05 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.34 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.15 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.07 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.22 secs Constructing during cohort covariates | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |========= | 12% | |============ | 17% | |=============== | 21% | |================== | 25% | |==================== | 29% | |======================= | 33% | |========================== | 38% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |====================================== | 54% | |========================================= | 58% | |============================================ | 62% | |=============================================== | 67% | |================================================== | 71% | |==================================================== | 75% | |======================================================= | 79% | |========================================================== | 83% | |============================================================= | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Removing num_events less than 1e+06 Censoring num_exposure_eras counts less than 1e+06 Censoring num_persons_exposed counts less than 1e+06 Censoring num_cases counts less than 1e+06 Censoring/removing dechallenge_attempt counts less than 1e+06 Censoring/removing DECHALLENGE FAIL or SUCCESS counts less than 1e+06 Censoring/removing rechallenge_attempt counts less than 1e+06 Censoring/removing rechallenge_fail or rechallenge_success counts less than 1e+06 Constructing features on server Fetching data from server Fetching data took 1.5 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.06 secs Constructing during cohort covariates | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Removing num_events less than 9999 Constructing features on server Fetching data from server Fetching data took 1.13 secs <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Constructing features on server Fetching data from server Fetching data took 1.52 secs Constructing during cohort covariates | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |=============================== | 44% | |======================================= | 56% | |=============================================== | 67% | |====================================================== | 78% | |============================================================== | 89% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% | | | 0% | |=== | 4% | |====== | 8% | |========= | 12% | |============ | 17% | |=============== | 21% | |================== | 25% | |==================== | 29% | |======================= | 33% | |========================== | 38% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |====================================== | 54% | |========================================= | 58% | |============================================ | 62% | |=============================================== | 67% | |================================================== | 71% | |==================================================== | 75% | |======================================================= | 79% | |========================================================== | 83% | |============================================================= | 88% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% <simpleError in connection_valid(dbObj@ptr): no slot of name "ptr" for this object of class "CovariateData"> Creating characterization results tables Migrating data set Migrator using SQL files in Characterization Creating migrations table Migrations table created Executing migration: Migration_1-v0_3_0_store_version.sql Saving migration: Migration_1-v0_3_0_store_version.sql Migration complete Migration_1-v0_3_0_store_version.sql Executing migration: Migration_2-v2_1_1_mean_exposure_time_type.sql Saving migration: Migration_2-v2_1_1_mean_exposure_time_type.sql Migration complete Migration_2-v2_1_1_mean_exposure_time_type.sql Closing database connection Updating version number - Preparing to upload rows 1 through 102 Uploading data took 3.79 secs [ FAIL 12 | WARN 29 | SKIP 7 | PASS 180 ] ══ Skipped tests (7) ═══════════════════════════════════════════════════════════ • not run locally (7): 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5', 'test-dbs.R:163:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-aggregateCovariate.R:391:3'): computeTargetAggregateCovariateAnalyses ── Error in `connection_valid(dbObj@ptr)`: no slot of name "ptr" for this object of class "CovariateData" Backtrace: ▆ 1. └─Characterization:::computeTargetAggregateCovariateAnalyses(...) at test-aggregateCovariate.R:391:3 2. └─Characterization:::exportAndromedaToCsv(...) 3. ├─andromeda$analysisRef 4. └─andromeda$analysisRef 5. ├─x[[name]] 6. └─x[[name]] 7. └─Andromeda (local) .local(x, i, ...) 8. └─Andromeda:::checkIfValid(x) 9. └─Andromeda::isValidAndromeda(x) 10. ├─duckdb::dbIsValid(x) 11. └─duckdb::dbIsValid(x) 12. └─RSQLite:::connection_valid(dbObj@ptr) ── Error ('test-aggregateCovariate.R:473:3'): computeCaseAggregateCovariateAnalyses ── Error in `connection_valid(dbObj@ptr)`: no slot of name "ptr" for this object of class "CovariateData" Backtrace: ▆ 1. └─Characterization:::computeCaseAggregateCovariateAnalyses(...) at test-aggregateCovariate.R:473:3 2. └─Characterization:::exportAndromedaToCsv(...) 3. ├─andromeda$analysisRef 4. └─andromeda$analysisRef 5. ├─x[[name]] 6. └─x[[name]] 7. └─Andromeda (local) .local(x, i, ...) 8. └─Andromeda:::checkIfValid(x) 9. └─Andromeda::isValidAndromeda(x) 10. ├─duckdb::dbIsValid(x) 11. └─duckdb::dbIsValid(x) 12. └─RSQLite:::connection_valid(dbObj@ptr) ── Error ('test-manualData.R:234:3'): manual data runCharacterizationAnalyses ── Error in `file(file, "rt")`: cannot open the connection Backtrace: ▆ 1. └─utils::read.csv(file.path(tempdir(), "result", "c_cohort_counts.csv")) at test-manualData.R:234:3 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ── Error ('test-manualData.R:496:3'): manual data checking exclude count works ── Error in `file(file, "rt")`: cannot open the connection Backtrace: ▆ 1. └─utils::read.csv(file.path(tempdir(), "result2", "c_cohort_counts.csv")) at test-manualData.R:496:3 2. └─utils::read.table(...) 3. └─base::file(file, "rt") ── Failure ('test-runCharacterization.R:141:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_cohort_details.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:144:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_settings.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:147:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_analysis_ref.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:150:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariate_ref.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:153:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariates.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:156:3'): runCharacterizationAnalyses ─── file.exists(file.path(tempFolder, "result", "c_covariates_continuous.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Failure ('test-runCharacterization.R:403:3'): min cell count works ────────── file.exists(file.path(tempFolder, "result_mincell", "c_cohort_counts.csv")) is not TRUE `actual`: FALSE `expected`: TRUE ── Error ('test-runCharacterization.R:406:3'): min cell count works ──────────── Error: '/tmp/RtmppJHewR/working_dir/RtmpkH79Di/CharacterizationMin1969082448b732/result_mincell/c_cohort_counts.csv' does not exist. Backtrace: ▆ 1. ├─readr::read_csv(file.path(tempFolder, "result_mincell", "c_cohort_counts.csv")) at test-runCharacterization.R:406:3 2. │ └─vroom::vroom(...) 3. │ └─vroom:::vroom_(...) 4. └─vroom (local) `<fn>`("/tmp/RtmppJHewR/working_dir/RtmpkH79Di/CharacterizationMin1969082448b732/result_mincell/c_cohort_counts.csv") 5. └─vroom:::check_path(path) [ FAIL 12 | WARN 29 | SKIP 7 | PASS 180 ] Error: Test failures In addition: Warning message: call dbDisconnect() when finished working with a connection Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc