CRAN Package Check Results for Package CodelistGenerator

Last updated on 2024-09-12 01:48:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.0 6.99 551.40 558.39 OK
r-devel-linux-x86_64-debian-gcc 3.1.0 4.29 369.69 373.98 ERROR
r-devel-linux-x86_64-fedora-clang 3.1.0 885.76 OK
r-devel-linux-x86_64-fedora-gcc 3.1.0 866.52 OK
r-devel-windows-x86_64 3.1.0 8.00 306.00 314.00 OK
r-patched-linux-x86_64 3.1.0 7.08 515.83 522.91 OK
r-release-linux-x86_64 3.1.0 5.94 521.25 527.19 OK
r-release-macos-arm64 3.1.0 199.00 OK
r-release-macos-x86_64 3.1.0 397.00 OK
r-release-windows-x86_64 3.1.0 9.00 301.00 310.00 OK
r-oldrel-macos-arm64 3.1.0 10.00 ERROR
r-oldrel-macos-x86_64 3.1.0 11.00 ERROR
r-oldrel-windows-x86_64 3.1.0 10.00 420.00 430.00 OK

Check Details

Version: 3.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘flextable’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [308s/216s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CodelistGenerator) > > test_check("CodelistGenerator") Starting 2 test processes [ FAIL 3 | WARN 662 | SKIP 14 | PASS 395 ] ══ Skipped tests (14) ══════════════════════════════════════════════════════════ • On CRAN (6): 'test-drugCodes.R:123:3', 'test-drugCodes.R:435:3', 'test-getICD10StandardCodes.R:84:3', 'test-getCandidateCodes.R:310:3', 'test-summariseCodeUse.R:2:1', 'test-summariseCodeUse.R:295:3' • Sys.getenv("CDM5_POSTGRESQL_DBNAME") == "" is TRUE (1): 'test-dbms.R:292:3' • Sys.getenv("CDM5_REDSHIFT_DBNAME") == "" is TRUE (4): 'test-codesFrom.R:131:3', 'test-dbms.R:5:3', 'test-findUnmappedCodes.R:3:3', 'test-summariseCodeUse.R:492:3' • Sys.getenv("CDM5_SQL_SERVER_SERVER") == "" is TRUE (1): 'test-codesInUse.R:36:3' • Sys.getenv("SNOWFLAKE_SERVER") == "" is TRUE (1): 'test-dbms.R:154:3' • Sys.getenv("darwinDbDatabaseServer") == "" is TRUE (1): 'test-synthea_sql_server.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-tableAchillesCodeUse.R:70:3'): table achilles code use expcted columns ── <rlib_error_package_not_found/rlang_error/error/condition> Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style, na = .options$na, title = .options$title, subtitle = .options$subtitle, caption = .options$caption, groupColumn = newGroupcolumn, groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder, colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required. Backtrace: ▆ 1. └─CodelistGenerator::tableAchillesCodeUse(...) at test-tableAchillesCodeUse.R:70:3 2. └─CodelistGenerator:::internalTableAchillesResult(...) 3. └─visOmopResults::visOmopTable(...) 4. └─visOmopResults::fxTable(...) 5. └─rlang::check_installed("flextable") ── Error ('test-tableCodeUse.R:106:3'): table code use expcted columns ───────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style, na = .options$na, title = .options$title, subtitle = .options$subtitle, caption = .options$caption, groupColumn = newGroupcolumn, groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder, colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required. Backtrace: ▆ 1. └─CodelistGenerator::tableCohortCodeUse(...) at test-tableCodeUse.R:106:3 2. └─CodelistGenerator:::internalTableCodeUse(...) 3. └─visOmopResults::visOmopTable(...) 4. └─visOmopResults::fxTable(...) 5. └─rlang::check_installed("flextable") ── Error ('test-tableCodeUse.R:262:3'): table code use output formats ────────── <rlib_error_package_not_found/rlang_error/error/condition> Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style, na = .options$na, title = .options$title, subtitle = .options$subtitle, caption = .options$caption, groupColumn = newGroupcolumn, groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder, colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required. Backtrace: ▆ 1. └─CodelistGenerator::tableCodeUse(...) at test-tableCodeUse.R:262:3 2. └─CodelistGenerator:::internalTableCodeUse(...) 3. └─visOmopResults::visOmopTable(...) 4. └─visOmopResults::fxTable(...) 5. └─rlang::check_installed("flextable") [ FAIL 3 | WARN 662 | SKIP 14 | PASS 395 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: package dependencies
Result: ERROR Package required and available but unsuitable version: ‘omopgenerics’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64