Last updated on 2025-03-04 01:55:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.2 | 15.54 | 200.89 | 216.43 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.2 | 11.68 | 168.58 | 180.26 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.11.2 | 371.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.11.2 | 425.12 | OK | |||
| r-devel-macos-arm64 | 0.11.2 | 180.00 | OK | |||
| r-devel-macos-x86_64 | 0.11.2 | 300.00 | OK | |||
| r-devel-windows-x86_64 | 0.11.2 | 15.00 | 257.00 | 272.00 | OK | |
| r-patched-linux-x86_64 | 0.11.2 | 17.34 | 206.11 | 223.45 | OK | |
| r-release-linux-x86_64 | 0.11.2 | 15.20 | 206.12 | 221.32 | OK | |
| r-release-macos-arm64 | 0.11.2 | 118.00 | OK | |||
| r-release-macos-x86_64 | 0.11.2 | 173.00 | OK | |||
| r-release-windows-x86_64 | 0.11.2 | 15.00 | 259.00 | 274.00 | OK | |
| r-oldrel-macos-arm64 | 0.11.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.11.2 | 184.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.11.2 | 22.00 | 324.00 | 346.00 | ERROR |
Version: 0.11.2
Check: tests
Result: ERROR
Running 'testthat.R' [163s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(CohortGenerator)
Loading required package: DatabaseConnector
Loading required package: R6
>
> test_check("CohortGenerator")
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: D:\temp\2025_03_03_01_50_00_4640\Rtmp8i07dz/GiBleed_5.3.zip to: D:\temp\2025_03_03_01_50_00_4640\Rtmp8i07dz/GiBleed_5.3.sqlite
Initiating cluster consisting only of main thread
Generating cohort set took 1.4 secs
Initiating cluster consisting only of main thread
Generating cohort set took 1.15 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.15 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.72 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.88 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.16 secs
Initiating cluster consisting only of main thread
An error occurred while generating cohortName = Fail Cohort. Error: Error in `.createErrorReport()`:
! Error executing SQL:
no such table: main.non_existant_table
An error report has been created at d:/Rcompile/CRANpkg/local/4.3/CohortGenerator.Rcheck/tests/testthat/errorReportSql.txt
[1] "Create cohorts with stopOnError = FALSE"
Initiating cluster consisting only of main thread
An error occurred while generating cohortName = Fail Cohort. Error: Error in `.createErrorReport()`:
! Error executing SQL:
no such table: main.non_existant_table
An error report has been created at d:/Rcompile/CRANpkg/local/4.3/CohortGenerator.Rcheck/tests/testthat/errorReportSql.txt
Generating cohort set took 0.8 secs
Initiating cluster consisting only of main thread
An error occurred while generating cohortName = Fail Cohort. Error: Error in `.createErrorReport()`:
! Error executing SQL:
no such table: main.non_existant_table
An error report has been created at d:/Rcompile/CRANpkg/local/4.3/CohortGenerator.Rcheck/tests/testthat/errorReportSql.txt
Generating cohort set took 1 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.25 secs
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Cohorts created in table main.cohort
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
Initiating cluster consisting only of main thread
Generating cohort set took 0.82 secs
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Generating sample set took 0.82 secs
Generating sample set took 0.18 secs
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Generating sample set took 0.43 secs
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Initiating cluster consisting only of main thread
Generating cohort set took 0.85 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.76 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.87 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.7 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.79 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.79 secs
Generating negative control outcomes set took 0.11 secs
Generating negative control outcomes set took 0.1 secs
Negative control set skipped
Generating negative control outcomes set took 0.09 secs
Negative control set skipped
Generating negative control outcomes set took 0.09 secs
Negative control set skipped
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Initiating cluster consisting only of main thread
Generating cohort set took 0.77 secs
Generating negative control outcomes set took 0.1 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.84 secs
Generating negative control outcomes set took 0.11 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.83 secs
Generating negative control outcomes set took 0.1 secs
Initiating cluster consisting only of main thread
Generating cohort set took 1.36 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.3 secs
Initiating cluster consisting only of main thread
Generating cohort set took 0.98 secs
[ FAIL 1 | WARN 1 | SKIP 1 | PASS 405 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-dbms-platforms.R:89:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ResultsDataModel.R:9:3'): (code run outside of `test_that()`) ──
Error in `download.file(url = paste0(driverSource$baseUrl, driverSource$fileName),
destfile = file.path(pathToDriver, driverSource$fileName),
method = method)`: cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. └─DatabaseConnector::downloadJdbcDrivers("postgresql", pathToDriver = jdbcDriverFolder) at test-ResultsDataModel.R:9:3
2. └─utils::download.file(...)
[ FAIL 1 | WARN 1 | SKIP 1 | PASS 405 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-oldrel-windows-x86_64