Last updated on 2025-06-04 01:52:01 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 7.61 | 659.65 | 667.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 4.31 | 444.06 | 448.37 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 1029.20 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 924.14 | OK | |||
| r-devel-windows-x86_64 | 1.0.2 | 10.00 | 372.00 | 382.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.2 | 9.31 | 630.24 | 639.55 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 7.74 | 632.67 | 640.41 | OK | |
| r-release-macos-arm64 | 1.0.3 | 127.00 | OK | |||
| r-release-macos-x86_64 | 1.0.3 | 231.00 | OK | |||
| r-release-windows-x86_64 | 1.0.2 | 10.00 | 400.00 | 410.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.3 | 153.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.3 | 241.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 12.00 | 562.00 | 574.00 | OK |
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [283s/143s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ]
══ Skipped tests (43) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-benchmarkDrugUtilisation.R:2:3', 'test-dailyDose.R:2:3',
'test-addDrugUtilisation.R:3:3', 'test-addDrugUtilisation.R:162:3',
'test-addDrugUtilisation.R:202:3',
'test-generateDrugUtilisationCohortSet.R:2:3',
'test-generateDrugUtilisationCohortSet.R:23:3',
'test-generateDrugUtilisationCohortSet.R:209:3',
'test-generatedAtcCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:32:3',
'test-generatedIngredientCohortSet.R:49:3',
'test-generatedIngredientCohortSet.R:64:3',
'test-generatedIngredientCohortSet.R:93:3', 'test-patterns.R:2:3',
'test-plotProportionOfPatientsCovered.R:2:3',
'test-plotProportionOfPatientsCovered.R:53:3',
'test-plotProportionOfPatientsCovered.R:95:3', 'test-plotTreatment.R:2:3',
'test-plots.R:2:3', 'test-plots.R:93:3', 'test-plots.R:157:3',
'test-require.R:2:3', 'test-require.R:108:3', 'test-require.R:313:3',
'test-require.R:419:3', 'test-require.R:513:3', 'test-require.R:584:3',
'test-indication.R:2:3', 'test-indication.R:201:3',
'test-indication.R:366:3', 'test-indication.R:483:3',
'test-summariseProportionOfPatientsCovered.R:94:3',
'test-summariseProportionOfPatientsCovered.R:170:3',
'test-summariseProportionOfPatientsCovered.R:277:3',
'test-summariseProportionOfPatientsCovered.R:499:3',
'test-summariseProportionOfPatientsCovered.R:552:3', 'test-tables.R:2:3',
'test-tables.R:97:3', 'test-tables.R:222:3', 'test-tables.R:306:3',
'test-tables.R:398:3', 'test-tables.R:457:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-generateDrugUtilisationCohortSet.R:142:3'): cohort attrition ──
any(...) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-generateDrugUtilisationCohortSet.R:166:3'): cohort attrition ──
colnames(cdm$cohort2) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "number_exposures") (`expected`).
actual | expected
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" | "number_exposures" [5]
[6] "days_prescribed" -
── Failure ('test-generateDrugUtilisationCohortSet.R:177:3'): cohort attrition ──
colnames(cdm$cohort3) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "days_prescribed") (`expected`).
actual | expected
[2] "subject_id" | "subject_id" [2]
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" -
[6] "days_prescribed" | "days_prescribed" [5]
── Failure ('test-generateDrugUtilisationCohortSet.R:188:3'): cohort attrition ──
colnames(cdm$cohort4) (`actual`) not identical to omopgenerics::cohortColumns("cohort") (`expected`).
actual | expected
[2] "subject_id" | "subject_id" [2]
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" -
[6] "days_prescribed" -
── Failure ('test-generateDrugUtilisationCohortSet.R:202:3'): cohort attrition ──
cohort1$number_exposures (`actual`) not identical to c(4L, 1L, 1L) (`expected`).
`actual`:
`expected`: 4 1 1
── Failure ('test-generateDrugUtilisationCohortSet.R:203:3'): cohort attrition ──
cohort1$days_prescribed (`actual`) not identical to c(134L, 46L, 24L) (`expected`).
`actual`:
`expected`: 134 46 24
[ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running 'testthat.R' [159s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(DrugUtilisation)
>
> test_check("DrugUtilisation")
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ]
══ Skipped tests (43) ══════════════════════════════════════════════════════════
• On CRAN (43): 'test-benchmarkDrugUtilisation.R:2:3', 'test-dailyDose.R:2:3',
'test-addDrugUtilisation.R:3:3', 'test-addDrugUtilisation.R:162:3',
'test-addDrugUtilisation.R:202:3', 'test-generatedAtcCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:2:3',
'test-generatedIngredientCohortSet.R:32:3',
'test-generatedIngredientCohortSet.R:49:3',
'test-generatedIngredientCohortSet.R:64:3',
'test-generatedIngredientCohortSet.R:93:3',
'test-generateDrugUtilisationCohortSet.R:2:3',
'test-generateDrugUtilisationCohortSet.R:23:3',
'test-generateDrugUtilisationCohortSet.R:209:3', 'test-patterns.R:2:3',
'test-plotProportionOfPatientsCovered.R:2:3',
'test-plotProportionOfPatientsCovered.R:53:3',
'test-plotProportionOfPatientsCovered.R:95:3', 'test-plotTreatment.R:2:3',
'test-plots.R:2:3', 'test-plots.R:93:3', 'test-plots.R:157:3',
'test-require.R:2:3', 'test-require.R:108:3', 'test-require.R:313:3',
'test-require.R:419:3', 'test-require.R:513:3', 'test-require.R:584:3',
'test-indication.R:2:3', 'test-indication.R:201:3',
'test-indication.R:366:3', 'test-indication.R:483:3',
'test-summariseProportionOfPatientsCovered.R:94:3',
'test-summariseProportionOfPatientsCovered.R:170:3',
'test-summariseProportionOfPatientsCovered.R:277:3',
'test-summariseProportionOfPatientsCovered.R:499:3',
'test-summariseProportionOfPatientsCovered.R:552:3', 'test-tables.R:2:3',
'test-tables.R:97:3', 'test-tables.R:222:3', 'test-tables.R:306:3',
'test-tables.R:398:3', 'test-tables.R:457:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-generateDrugUtilisationCohortSet.R:142:3'): cohort attrition ──
any(...) is not TRUE
`actual`: FALSE
`expected`: TRUE
── Failure ('test-generateDrugUtilisationCohortSet.R:166:3'): cohort attrition ──
colnames(cdm$cohort2) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "number_exposures") (`expected`).
actual | expected
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" | "number_exposures" [5]
[6] "days_prescribed" -
── Failure ('test-generateDrugUtilisationCohortSet.R:177:3'): cohort attrition ──
colnames(cdm$cohort3) (`actual`) not identical to c(omopgenerics::cohortColumns("cohort"), "days_prescribed") (`expected`).
actual | expected
[2] "subject_id" | "subject_id" [2]
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" -
[6] "days_prescribed" | "days_prescribed" [5]
── Failure ('test-generateDrugUtilisationCohortSet.R:188:3'): cohort attrition ──
colnames(cdm$cohort4) (`actual`) not identical to omopgenerics::cohortColumns("cohort") (`expected`).
actual | expected
[2] "subject_id" | "subject_id" [2]
[3] "cohort_start_date" | "cohort_start_date" [3]
[4] "cohort_end_date" | "cohort_end_date" [4]
[5] "number_exposures" -
[6] "days_prescribed" -
── Failure ('test-generateDrugUtilisationCohortSet.R:202:3'): cohort attrition ──
cohort1$number_exposures (`actual`) not identical to c(4L, 1L, 1L) (`expected`).
`actual`:
`expected`: 4 1 1
── Failure ('test-generateDrugUtilisationCohortSet.R:203:3'): cohort attrition ──
cohort1$days_prescribed (`actual`) not identical to c(134L, 46L, 24L) (`expected`).
`actual`:
`expected`: 134 46 24
[ FAIL 6 | WARN 0 | SKIP 43 | PASS 110 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64