Last updated on 2026-10-24 01:51:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.4 | 14.74 | 144.90 | 159.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.4 | 10.94 | 104.80 | 115.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.4 | 12.00 | 104.19 | 116.19 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.4 | 11.00 | 105.82 | 116.82 | ERROR | |
| r-devel-windows-x86_64 | 1.3.4 | 18.00 | 158.00 | 176.00 | OK | |
| r-patched-linux-x86_64 | 1.3.4 | 15.93 | 133.84 | 149.77 | OK | |
| r-release-linux-x86_64 | 1.3.4 | 14.95 | 133.10 | 148.05 | OK | |
| r-release-macos-arm64 | 1.3.4 | 4.00 | 193.00 | 197.00 | OK | |
| r-release-macos-x86_64 | 1.3.4 | 11.00 | 296.00 | 307.00 | OK | |
| r-release-windows-x86_64 | 1.3.4 | 18.00 | 143.00 | 161.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.4 | 3.00 | 193.00 | 196.00 | OK | |
| r-oldrel-macos-x86_64 | 1.3.4 | 11.00 | 365.00 | 376.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3.4 | 24.00 | 179.00 | 203.00 | OK |
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [0m/10m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(GIFT)
>
> test_check("GIFT")
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists-24.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists_conditional-34.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists_raw-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_coverage-22.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env-31.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env_meta_misc-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env_meta_raster-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_lists-8.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_lists-27.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_no_overlap-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_overlap-18.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_phylogeny-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_references-28.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_regions-29.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_richness-21.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_shapes-29.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_spatial-26.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species_distribution-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species_lookup-17.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_taxgroup-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_taxonomy-30.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits-23.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_meta-24.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_raw-22.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_tax-23.R
Saving _problems/test-GIFT_versions-5.R
[ FAIL 27 | WARN 1 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GIFT_checklists.R:20:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_checklists_conditional.R:30:3'): invalid inputs ───────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists_conditional.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists_conditional(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_checklists_raw.R:15:3'): invalid inputs ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists_raw.R:15:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists_raw(ref_ID = NULL, list_ID = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_coverage.R:19:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_coverage.R:19:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_coverage(what = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env.R:25:3'): invalid inputs ──────────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env.R:25:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env(sumstat = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env_meta_misc.R:20:3'): invalid inputs ────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10008 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env_meta_misc.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env_meta_misc(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env_meta_raster.R:20:3'): invalid inputs ──────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env_meta_raster.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env_meta_raster(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_lists.R:5:3'): data frame output format ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-GIFT_lists.R:5:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_lists(GIFT_version = "beta")
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_lists.R:22:3'): invalid inputs ────────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_lists.R:22:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_lists(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_no_overlap.R:16:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_no_overlap.R:16:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_no_overlap(entity_IDs = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_overlap.R:14:1'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_overlap.R:14:1
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_overlap(resource = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_phylogeny.R:15:3'): invalid inputs ────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_phylogeny.R:15:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_phylogeny(clade = NA, GIFT_version = "beta")
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_references.R:23:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_references.R:23:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_references(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_regions.R:24:3'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10007 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_regions.R:24:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_regions(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_richness.R:17:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_richness.R:17:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_richness(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_shapes.R:24:3'): invalid inputs ───────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_shapes.R:24:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_shapes(entity_ID = c(677, 200), GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_spatial.R:23:3'): data frame output format ────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_spatial.R:23:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_spatial(shp = NULL, coordinates = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species.R:20:3'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species_distribution.R:20:3'): invalid inputs ─────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species_distribution.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species_distribution(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species_lookup.R:14:3'): invalid inputs ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10007 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species_lookup.R:14:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species_lookup(genus = 1)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_taxgroup.R:20:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_taxgroup.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_taxgroup(work_ID = c(1:5), GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_taxonomy.R:25:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_taxonomy.R:25:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_taxonomy(GIFT_version = 1)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits.R:21:3'): invalid inputs ───────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10007 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits.R:21:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits(bias_deriv = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_meta.R:19:1'): invalid inputs ──────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_meta.R:19:1
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_meta(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_raw.R:19:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_raw.R:19:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_raw(bias_deriv = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_tax.R:20:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10007 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_tax.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_tax(trait_IDs = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_versions.R:5:3'): data frame output format ────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://gift.uni-goettingen.de/api/index.php?query=versions'
Backtrace:
▆
1. └─GIFT::GIFT_versions() at test-GIFT_versions.R:5:3
2. └─jsonlite::read_json(...)
3. └─jsonlite::parse_json(...)
4. └─jsonlite:::parse_and_simplify(...)
5. └─jsonlite:::parseJSON(txt, bigint_as_char)
6. └─jsonlite:::parse_con(txt, bigint_as_char)
7. ├─base::open(con, "rb")
8. └─base::open.connection(con, "rb")
[ FAIL 27 | WARN 1 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘GIFT.Rmd’ using rmarkdown
Quitting from GIFT.Rmd:510-516 [anemone_lookup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10010 milliseconds
---
Backtrace:
▆
1. └─GIFT::GIFT_species_lookup(genus = "Anemonoides", epithet = "nemorosa")
2. └─GIFT:::check_api(api)
3. ├─httr2::resp_status_desc(httr2::req_perform(resp))
4. │ └─httr2:::check_response(resp)
5. │ └─httr2:::is_response(resp)
6. └─httr2::req_perform(resp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GIFT.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10010 milliseconds
--- failed re-building ‘GIFT.Rmd’
SUMMARY: processing the following file failed:
‘GIFT.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [0m/10m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(GIFT)
>
> test_check("GIFT")
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists-24.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists_conditional-34.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_checklists_raw-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_coverage-22.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env-31.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env_meta_misc-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_env_meta_raster-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_lists-8.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_lists-27.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_no_overlap-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_overlap-18.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_phylogeny-19.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_references-28.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_regions-29.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_richness-21.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_shapes-29.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_spatial-26.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species_distribution-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_species_lookup-17.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_taxgroup-25.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_taxonomy-30.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits-23.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_meta-24.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_raw-22.R
Either the API is wrongly specified or the server is down.
Saving _problems/test-GIFT_traits_tax-23.R
Saving _problems/test-GIFT_versions-5.R
[ FAIL 27 | WARN 1 | SKIP 0 | PASS 12 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GIFT_checklists.R:20:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_checklists_conditional.R:30:3'): invalid inputs ───────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists_conditional.R:30:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists_conditional(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_checklists_raw.R:15:3'): invalid inputs ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10001 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_checklists_raw.R:15:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_checklists_raw(ref_ID = NULL, list_ID = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_coverage.R:19:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10001 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_coverage.R:19:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_coverage(what = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env.R:25:3'): invalid inputs ──────────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env.R:25:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env(sumstat = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env_meta_misc.R:20:3'): invalid inputs ────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env_meta_misc.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env_meta_misc(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_env_meta_raster.R:20:3'): invalid inputs ──────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10009 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_env_meta_raster.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_env_meta_raster(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_lists.R:5:3'): data frame output format ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-GIFT_lists.R:5:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_lists(GIFT_version = "beta")
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_lists.R:22:3'): invalid inputs ────────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_lists.R:22:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_lists(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_no_overlap.R:16:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_no_overlap.R:16:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_no_overlap(entity_IDs = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_overlap.R:14:1'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_overlap.R:14:1
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_overlap(resource = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_phylogeny.R:15:3'): invalid inputs ────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_phylogeny.R:15:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_phylogeny(clade = NA, GIFT_version = "beta")
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_references.R:23:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10011 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_references.R:23:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_references(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_regions.R:24:3'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_regions.R:24:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_regions(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_richness.R:17:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10004 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_richness.R:17:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_richness(taxon_name = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_shapes.R:24:3'): invalid inputs ───────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10011 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_shapes.R:24:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_shapes(entity_ID = c(677, 200), GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_spatial.R:23:3'): data frame output format ────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10006 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_spatial.R:23:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_spatial(shp = NULL, coordinates = NULL)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species.R:20:3'): invalid inputs ──────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species_distribution.R:20:3'): invalid inputs ─────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species_distribution.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species_distribution(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_species_lookup.R:14:3'): invalid inputs ───────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_species_lookup.R:14:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_species_lookup(genus = 1)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_taxgroup.R:20:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10005 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_taxgroup.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_taxgroup(work_ID = c(1:5), GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_taxonomy.R:25:3'): invalid inputs ─────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_taxonomy.R:25:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_taxonomy(GIFT_version = 1)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits.R:21:3'): invalid inputs ───────────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits.R:21:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits(bias_deriv = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_meta.R:19:1'): invalid inputs ──────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10003 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_meta.R:19:1
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_meta(GIFT_version = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_raw.R:19:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_raw.R:19:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_raw(bias_deriv = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_traits_tax.R:20:3'): invalid inputs ───────────────────────
<httr2_failure/httr2_error/rlang_error/error/condition>
Error in `httr2::req_perform(resp)`: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10009 milliseconds
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-GIFT_traits_tax.R:20:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─GIFT::GIFT_traits_tax(trait_IDs = NA)
8. └─GIFT:::check_api(api)
9. ├─httr2::resp_status_desc(httr2::req_perform(resp))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(resp)
13. └─httr2:::handle_resp(req, resp, error_call = error_call)
14. └─rlang::cnd_signal(resp)
── Error ('test-GIFT_versions.R:5:3'): data frame output format ────────────────
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://gift.uni-goettingen.de/api/index.php?query=versions'
Backtrace:
▆
1. └─GIFT::GIFT_versions() at test-GIFT_versions.R:5:3
2. └─jsonlite::read_json(...)
3. └─jsonlite::parse_json(...)
4. └─jsonlite:::parse_and_simplify(...)
5. └─jsonlite:::parseJSON(txt, bigint_as_char)
6. └─jsonlite:::parse_con(txt, bigint_as_char)
7. ├─base::open(con, "rb")
8. └─base::open.connection(con, "rb")
[ FAIL 27 | WARN 1 | SKIP 0 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘GIFT.Rmd’ using rmarkdown
Quitting from GIFT.Rmd:510-516 [anemone_lookup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
---
Backtrace:
▆
1. └─GIFT::GIFT_species_lookup(genus = "Anemonoides", epithet = "nemorosa")
2. └─GIFT:::check_api(api)
3. ├─httr2::resp_status_desc(httr2::req_perform(resp))
4. │ └─httr2:::check_response(resp)
5. │ └─httr2:::is_response(resp)
6. └─httr2::req_perform(resp)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GIFT.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [gift.uni-goettingen.de]:
Connection timed out after 10002 milliseconds
--- failed re-building ‘GIFT.Rmd’
SUMMARY: processing the following file failed:
‘GIFT.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc