Last updated on 2026-10-24 01:51:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-21 | 2.91 | 180.84 | 183.75 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1-21 | 2.21 | 143.78 | 145.99 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1-21 | 137.71 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-21 | 146.18 | OK | |||
| r-devel-windows-x86_64 | 1.1-21 | 9.00 | 130.00 | 139.00 | OK | --no-vignettes |
| r-patched-linux-x86_64 | 1.1-21 | 3.72 | 156.13 | 159.85 | OK | |
| r-release-linux-x86_64 | 1.1-21 | 2.74 | 156.49 | 159.23 | OK | |
| r-release-macos-arm64 | 1.1-21 | 1.00 | 72.00 | 73.00 | OK | |
| r-release-macos-x86_64 | 1.1-21 | 3.00 | 360.00 | 363.00 | OK | |
| r-release-windows-x86_64 | 1.1-21 | 8.00 | 88.00 | 96.00 | OK | --no-vignettes |
| r-oldrel-macos-arm64 | 1.1-21 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1-21 | 2.00 | 298.00 | 300.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1-21 | 6.00 | 81.00 | 87.00 | OK | --no-vignettes |
Version: 1.1-21
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Ch_analysing_longitudinal_dataI.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR2':
schizophrenia
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
The following object is masked from 'package:MASS':
geyser
--- finished re-building 'Ch_analysing_longitudinal_dataI.Rnw'
--- re-building ‘Ch_analysing_longitudinal_dataII.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
Loading required package: Matrix
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR2':
schizophrenia
Warning in checkConv(attr(opt, "derivs"), opt$par, ctrl = control$checkConv, :
Model failed to converge with max|grad| = 0.197379 (tol = 0.002, component 1)
See ?lme4::convergence and ?lme4::troubleshooting.
--- finished re-building 'Ch_analysing_longitudinal_dataII.Rnw'
--- re-building ‘Ch_analysis_of_variance.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: RColorBrewer
--- finished re-building 'Ch_analysis_of_variance.Rnw'
--- re-building ‘Ch_cluster_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Attaching package: 'mvtnorm'
The following object is masked from 'package:mclust':
dmvnorm
--- finished re-building 'Ch_cluster_analysis.Rnw'
--- re-building ‘Ch_conditional_inference.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: survival
Warning in chisq.test(suicides) :
Chi-squared approximation may be incorrect
Warning in approximate(B = 19999) :
'B' is deprecated; use 'nresample' instead
--- finished re-building 'Ch_conditional_inference.Rnw'
--- re-building ‘Ch_density_estimation.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Attaching package: 'boot'
The following object is masked from 'package:flexmix':
boot
Package 'mclust' version 6.1.3
Type 'citation("mclust")' for citing this R package in publications.
Warning in sub(object$syntax$docexpr, val, chunk[pos[1L]]) :
argument 'replacement' has length > 1 and only the first element will be used
--- finished re-building 'Ch_density_estimation.Rnw'
--- re-building ‘Ch_errata.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_errata.Rnw'
--- re-building ‘Ch_gam.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: nlme
This is mgcv 1.9-4. For overview type '?mgcv'.
Loading required package: parallel
Loading required package: stabs
Loading required package: RColorBrewer
--- finished re-building 'Ch_gam.Rnw'
--- re-building ‘Ch_graphical_display.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_graphical_display.Rnw'
--- re-building ‘Ch_introduction_to_R.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Error in quantile.default(x, prob = c(0.25, 0.75), names = FALSE) :
missing values and NaN's not allowed if 'na.rm' is FALSE
--- finished re-building 'Ch_introduction_to_R.Rnw'
--- re-building ‘Ch_logistic_regression_glm.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
--- finished re-building 'Ch_logistic_regression_glm.Rnw'
--- re-building ‘Ch_meta_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_meta_analysis.Rnw'
--- re-building ‘Ch_multidimensional_scaling.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: RColorBrewer
Warning in cmdscale(watervoles, k = 13, eig = TRUE) :
only 7 of the first 13 eigenvalues are > 0
--- finished re-building 'Ch_multidimensional_scaling.Rnw'
--- re-building ‘Ch_multiple_linear_regression.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: RColorBrewer
--- finished re-building 'Ch_multiple_linear_regression.Rnw'
--- re-building ‘Ch_principal_components_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
--- finished re-building 'Ch_principal_components_analysis.Rnw'
--- re-building ‘Ch_recursive_partitioning.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
Loading required package: libcoin
Attaching package: 'partykit'
The following objects are masked from 'package:party':
cforest, ctree, ctree_control, edge_simple, mob,
mob_control, node_barplot, node_bivplot,
node_boxplot, node_inner, node_surv, node_terminal,
varimp
--- finished re-building 'Ch_recursive_partitioning.Rnw'
--- re-building ‘Ch_simple_inference.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
--- finished re-building 'Ch_simple_inference.Rnw'
--- re-building ‘Ch_simultaneous_inference.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: mvtnorm
Loading required package: survival
Loading required package: TH.data
Loading required package: MASS
Attaching package: 'TH.data'
The following object is masked from 'package:MASS':
geyser
Loading required package: Matrix
Attaching package: 'lme4'
The following object is masked from 'package:HSAUR2':
schizophrenia
--- finished re-building 'Ch_simultaneous_inference.Rnw'
--- re-building ‘Ch_survival_analysis.Rnw’ using Sweave
Loading required package: HSAUR2
Loading required package: tools
Loading required package: grid
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
Loading required package: sandwich
Warning in plot.window(...) :
"legend.text" is not a graphical parameter
Warning in plot.window(...) : "legend.bty" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.text" is not a graphical parameter
Warning in plot.xy(xy, type, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.text" is not a graphical parameter
Warning in axis(side = side, at = at, labels = labels, ...) :
"legend.bty" is not a graphical parameter
Warning in box(...) : "legend.text" is not a graphical parameter
Warning in box(...) : "legend.bty" is not a graphical parameter
Warning in title(...) : "legend.text" is not a graphical parameter
Warning in title(...) : "legend.bty" is not a graphical parameter
Warning in approximate(B = 10000) :
'B' is deprecated; use 'nresample' instead
Error: processing vignette 'Ch_survival_analysis.Rnw' failed with diagnostics:
chunk 13 (label = SA-GBSG2-zph)
Error in a$specials[[i]] : subscript out of bounds
--- failed re-building 'Ch_survival_analysis.Rnw'
SUMMARY: processing the following file failed:
‘Ch_survival_analysis.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc