CRAN Package Check Results for Package abn

Last updated on 2024-11-03 02:49:16 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.1 134.48 172.61 307.09 OK --no-tests
r-devel-linux-x86_64-debian-gcc 3.1.1 96.48 118.52 215.00 OK --no-tests
r-devel-linux-x86_64-fedora-clang 3.1.1 2376.56 OK
r-devel-linux-x86_64-fedora-gcc 3.1.1 2181.69 ERROR
r-devel-windows-x86_64 3.1.1 151.00 309.00 460.00 OK
r-patched-linux-x86_64 3.1.1 138.95 162.29 301.24 NOTE --no-tests
r-release-linux-x86_64 3.1.1 1.00 1.85 2.85 ERROR --no-tests
r-release-macos-arm64 3.1.1 482.00 ERROR
r-release-macos-x86_64 3.1.1 731.00 ERROR
r-release-windows-x86_64 3.1.1 150.00 314.00 464.00 NOTE
r-oldrel-macos-arm64 3.1.1 554.00 ERROR
r-oldrel-macos-x86_64 3.1.1 833.00 ERROR
r-oldrel-windows-x86_64 3.1.1 172.00 395.00 567.00 ERROR

Check Details

Version: 3.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [26m/90m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.1.1 (2024-05-22) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 3.1.1
Flags: --no-tests
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavor: r-patched-linux-x86_64

Version: 3.1.1
Flags: --no-tests
Check: package dependencies
Result: ERROR Packages required but not available: 'lme4', 'Rcpp', 'RcppArmadillo' Packages suggested but not available for checking: 'devtools', 'INLA' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-linux-x86_64

Version: 3.1.1
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘INLA’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.1.1
Check: installed package size
Result: NOTE installed size is 13.2Mb sub-directories of 1Mb or more: data 1.0Mb extdata 2.9Mb libs 8.1Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 3.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [332s/361s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) [ FAIL 7 | WARN 0 | SKIP 56 | PASS 444 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-release-macos-arm64

Version: 3.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [532s/556s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) [ FAIL 7 | WARN 0 | SKIP 56 | PASS 444 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-release-macos-x86_64

Version: 3.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [360s/386s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) [ FAIL 7 | WARN 0 | SKIP 56 | PASS 444 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-oldrel-macos-arm64

Version: 3.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [10m/11m] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) [ FAIL 7 | WARN 0 | SKIP 56 | PASS 444 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64

Version: 3.1.1
Check: tests
Result: ERROR Running 'testthat.R' [126s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(abn) abn version 3.1.1 (2024-05-22) is loaded. To cite the package 'abn' in publications call: citation('abn'). Attaching package: 'abn' The following object is masked from 'package:base': factorial > > require(RhpcBLASctl) Loading required package: RhpcBLASctl > omp_set_num_threads(2) > > test_check("abn") Loading required package: Matrix Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. Running in single core mode. 'cluster.type' is ignored. [ FAIL 7 | WARN 0 | SKIP 82 | PASS 301 ] ══ Skipped tests (82) ══════════════════════════════════════════════════════════ • BuildScoreCache(method=mle) crashes with Poisson nodes (1): 'test-fitabn_mle.R:138:3' • INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7' • On CRAN (51): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3', 'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3', 'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3', 'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3', 'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3', 'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3', 'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3', 'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3', 'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3', 'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3', 'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3', 'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3', 'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3', 'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3', 'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3', 'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3', 'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3', 'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3', 'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3', 'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3', 'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3', 'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3', 'test-simulateabn.R:810:3', 'test-tographviz.R:27:3', 'test-tographviz.R:171:3' • Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3' • `buildScoreCache.mle()` is tested mainly on Unix-like systems. (6): 'test-build_score_cache_mle.R:32:5', 'test-build_score_cache_mle.R:84:5', 'test-build_score_cache_mle.R:121:5', 'test-build_score_cache_mle.R:159:5', 'test-build_score_cache_mle.R:220:5', 'test-build_score_cache_mle.R:260:5' • empty test (2): 'test-abn-methods.R:15:1', 'test-build_score_cache_mle.R:264:1' • fitAbn.mle() is tested mainly on Unix-like systems (8): 'test-fitabn_mle.R:32:7', 'test-fitabn_mle.R:83:7', 'test-fitabn_mle.R:132:7', 'test-fitabn_mle.R:286:7', 'test-fitabn_mle.R:384:7', 'test-fitabn_mle.R:482:7', 'test-fitabn_mle.R:592:9', 'test-fitabn_mle.R:704:9' • simulateAbn() is tested mainly on Unix-like systems (12): 'test-simulateabn.R:35:5', 'test-simulateabn.R:90:5', 'test-simulateabn.R:139:5', 'test-simulateabn.R:188:5', 'test-simulateabn.R:236:5', 'test-simulateabn.R:304:5', 'test-simulateabn.R:373:5', 'test-simulateabn.R:422:5', 'test-simulateabn.R:471:5', 'test-simulateabn.R:704:5', 'test-simulateabn.R:805:5', 'test-simulateabn.R:994:9' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7 ── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7 ── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7 ── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7 ── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7 ── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ── Expected `buildScoreCache(...)` to run without any errors. i Actually got a <packageNotFoundError> with text: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7 ── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ── <packageNotFoundError/error/condition> Error in `library(p, character.only = TRUE)`: there is no package called 'INLA' Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3 2. │ └─base::withCallingHandlers(...) 3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5 4. │ └─base::withCallingHandlers(...) 5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7 6. │ └─testthat:::expect_condition_matching(...) 7. │ └─testthat:::quasi_capture(...) 8. │ ├─testthat (local) .capture(...) 9. │ │ └─base::withCallingHandlers(...) 10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 11. └─abn::buildScoreCache(...) 12. └─abn::buildScoreCache.bayes(...) 13. └─... %do% ... 14. └─e$fun(obj, substitute(ex), parent.frame(), e$data) 15. └─base::library(p, character.only = TRUE) [ FAIL 7 | WARN 0 | SKIP 82 | PASS 301 ] Deleting unused snapshots: • tographviz/graph.dot • tographviz/graph1.dot • tographviz/graph_group.dot Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64