Last updated on 2026-02-22 02:50:46 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| datarium | 14 | ||
| factoextra | 14 | ||
| fastqcr | 14 | ||
| ggcorrplot | 2 | 12 | |
| ggpubr | 14 | ||
| rstatix | 14 | ||
| survminer | 9 | 2 | 3 |
Current CRAN status: OK: 14
Current CRAN status: NOTE: 14
Version: 1.0.7
Check: Rd files
Result: NOTE
checkRd: (-1) fviz_nbclust.Rd:75: Lost braces; missing escapes or markup?
75 | (2001) proposed: "the smallest k such that gap(k) >= gap(k+1) - s_{k+1}".
| ^
checkRd: (-1) fviz_nbclust.Rd:77: Lost braces; missing escapes or markup?
77 | SE.factor*s_{k+1}" where SE.factor is a numeric value which can be 1
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: NOTE: 2, OK: 12
Version: 0.1.4.1
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)’
Authors@R: ‘Alboukadel Kassambara [aut, cre], Indrajeet Patil [ctb] (ORCID: <https://orcid.org/0000-0003-1995-6531>, Twitter: @patilindrajeets)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 9, NOTE: 2, OK: 3
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 7.574 0.016 10.050
ggsurvplot 6.693 0.039 8.260
ggsurvplot_add_all 5.065 0.035 6.966
ggsurvplot_facet 5.011 0.004 7.110
ggcoxdiagnostics 4.565 0.039 5.798
ggcoxfunctional 4.008 0.040 6.395
ggsurvplot_df 3.750 0.004 5.606
ggsurvtheme 3.123 0.011 5.243
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 4.847 0.008 5.469
ggsurvplot 4.120 0.003 5.086
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 6.755 0.047 8.256
ggsurvplot 6.482 0.032 8.405
ggsurvplot_add_all 4.685 0.008 6.187
ggsurvplot_facet 4.516 0.014 5.916
ggcoxdiagnostics 4.307 0.059 5.115
ggsurvevents 4.067 0.047 5.700
ggcoxfunctional 3.806 0.039 5.155
Flavor: r-patched-linux-x86_64
Version: 0.5.1
Check: examples
Result: ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: surv_fit
> ### Title: Create Survival Curves
> ### Aliases: surv_fit
>
> ### ** Examples
>
>
> library("survival")
Attaching package: ‘survival’
The following object is masked from ‘package:survminer’:
myeloma
> library("magrittr")
>
> # Case 1: One formula and One data set
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = colon)
> surv_pvalue(fit)
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
>
>
> # Case 2: List of formulas and One data set.
> # - Different formulas are applied to the same data set
> # - Returns a (named) list of survfit objects
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> # Create a named list of formulas
> formulas <- list(
+ sex = Surv(time, status) ~ sex,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves for each formula
> fit <- surv_fit(formulas, data = colon)
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`colon::rx`
variable pval method pval.txt
1 rx 4.990735e-08 Log-rank p < 0.0001
>
> # Case 3: One formula and List of data sets
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
> fit <- surv_fit(Surv(time, status) ~ sex,
+ data = list(colon, lung))
> surv_pvalue(fit)
$`colon::sex`
variable pval method pval.txt
1 sex 0.6107936 Log-rank p = 0.61
$`lung::sex`
variable pval method pval.txt
1 sex 0.001311165 Log-rank p = 0.0013
>
>
> # Case 4: List of formulas and List of data sets
> # - Each formula is applied to each of the data in the data list
> # - argument: match.fd = FALSE
> #:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>
> # Create two data sets
> set.seed(123)
> colon1 <- dplyr::sample_frac(colon, 1/2)
> set.seed(1234)
> colon2 <- dplyr::sample_frac(colon, 1/2)
>
> # Create a named list of formulas
> formula.list <- list(
+ sex = Surv(time, status) ~ sex,
+ adhere = Surv(time, status) ~ adhere,
+ rx = Surv(time, status) ~ rx
+ )
>
> # Fit survival curves
> fit <- surv_fit(formula.list, data = list(colon1, colon2),
+ match.fd = FALSE)
Error:
! `combine()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `vctrs::vec_c()` instead.
Backtrace:
▆
1. ├─survminer::surv_fit(...)
2. │ └─purrr::map(formula, .map_each, data) %>% dplyr::combine()
3. └─dplyr::combine(.)
4. └─lifecycle::deprecate_stop("1.0.0", "combine()", "vctrs::vec_c()")
5. └─lifecycle:::deprecate_stop0(msg)
6. └─rlang::cnd_signal(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggsurvplot_group_by 7.322 0.034 9.961
ggsurvplot 6.541 0.032 7.553
ggsurvplot_facet 5.049 0.009 7.982
ggsurvplot_add_all 4.864 0.008 5.017
ggcoxdiagnostics 4.351 0.068 5.380
ggsurvevents 4.189 0.091 5.278
Flavor: r-release-linux-x86_64
Version: 0.5.1
Check: installed package size
Result: NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
doc 5.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64