Last updated on 2026-04-26 03:50:03 CEST.
| Package | ERROR | OK |
|---|---|---|
| henna | 12 | |
| LISTO | 1 | 11 |
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, OK: 11
Version: 0.6.5
Check: examples
Result: ERROR
Running examples in ‘LISTO-Ex.R’ failed
The error most likely occurred in:
> ### Name: buildSeuratMarkerList
> ### Title: Build a Seurat marker list ready to be used by LISTO
> ### Aliases: buildSeuratMarkerList
>
> ### ** Examples
>
> seuratPath <- system.file('extdata', 'seuratObj.qs2', package='LISTO')
> seuratObj <- qs2::qs_read(seuratPath)
Error in loadNamespace(x) : there is no package called ‘qs2’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-macos-x86_64
Version: 0.6.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(LISTO)
>
> test_check("LISTO")
Error in `source_dir()`:
! Failed to evaluate './helper-globals.R'.
Caused by error in `loadNamespace()`:
! there is no package called 'qs2'
Backtrace:
▆
1. ├─testthat::test_check("LISTO")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(...)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. ├─base::loadNamespace(x) at ./helper-globals.R:2:1
15. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
16. │ │ └─base (local) withOneRestart(expr, restarts[[1L]])
17. │ │ └─base (local) doWithOneRestart(return(expr), restart)
18. │ └─base::stop(cond)
19. └─testthat (local) `<fn>`(`<pckgNtFE>`)
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
Execution halted
Flavor: r-release-macos-x86_64