CRAN Package Check Results for Maintainer ‘Karl Broman <broman at wisc.edu>’

Last updated on 2025-05-20 01:49:10 CEST.

Package	FAIL	NOTE	OK
aRxiv			13
broman			13
chromer			13
lineup			13
lineup2			13
mbmixture			13
mmconvert			13
negenes			13
qtl		3	10
qtl2		3	10
qtl2convert			13
qtl2fst	1		12
qtlbook			13
qtlcharts			13
regress			13
simcross			13
xoi			13

Package aRxiv

Current CRAN status: OK: 13

Package broman

Current CRAN status: OK: 13

Package chromer

Current CRAN status: OK: 13

Package lineup

Current CRAN status: OK: 13

Package lineup2

Current CRAN status: OK: 13

Package mbmixture

Current CRAN status: OK: 13

Package mmconvert

Current CRAN status: OK: 13

Package negenes

Current CRAN status: OK: 13

Package qtl

Current CRAN status: NOTE: 3, OK: 10

Version: 1.70
Check: installed package size
Result: NOTE installed size is 11.5Mb sub-directories of 1Mb or more: R 2.1Mb contrib 3.7Mb doc 3.0Mb libs 1.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2

Current CRAN status: NOTE: 3, OK: 10

Additional issues

gcc-UBSAN

Version: 0.36
Check: installed package size
Result: NOTE installed size is 44.5Mb sub-directories of 1Mb or more: extdata 3.3Mb libs 39.9Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2convert

Current CRAN status: OK: 13

Package qtl2fst

Current CRAN status: FAIL: 1, OK: 12

Version: 0.30
Check: PDF version of manual
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: 1 2 26 42 No. genotypes by chr: 1 2 2 2 > > # clean up: remove all the files we created > unlink(fst_files(fpr)) > > > > ### * <FOOTER> > ### > cleanEx() detaching 'package:qtl2' > options(digits = 7L) > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n") Time elapsed: 4.75 0.81 5.58 NA NA > grDevices::dev.off() null device 1 > ### > ### Local variables: *** > ### mode: outline-minor *** > ### outline-regexp: "\\(> \\)?### [*]+" *** > ### End: *** > quit('no') ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-devel-windows-x86_64

Package qtlbook

Current CRAN status: OK: 13

Package qtlcharts

Current CRAN status: OK: 13

Package regress

Current CRAN status: OK: 13

Package simcross

Current CRAN status: OK: 13

Package xoi

Current CRAN status: OK: 13