Last updated on 2025-12-03 02:52:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.4 | 17.20 | 149.15 | 166.35 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.4 | 10.28 | 105.16 | 115.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.4 | 35.00 | 220.80 | 255.80 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.4 | 82.00 | 190.96 | 272.96 | OK | |
| r-devel-windows-x86_64 | 1.2.4 | 20.00 | 146.00 | 166.00 | OK | |
| r-patched-linux-x86_64 | 1.2.4 | 15.68 | 142.84 | 158.52 | OK | |
| r-release-linux-x86_64 | 1.2.4 | 15.75 | 140.96 | 156.71 | OK | |
| r-release-macos-arm64 | 1.2.4 | OK | ||||
| r-release-macos-x86_64 | 1.2.4 | 16.00 | 128.00 | 144.00 | OK | |
| r-release-windows-x86_64 | 1.2.4 | 20.00 | 142.00 | 162.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.4 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.2.4 | 15.00 | 126.00 | 141.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.2.4 | 25.00 | 189.00 | 214.00 | ERROR |
Version: 1.2.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘flexsdm’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [34s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(glossa)
Loading required package: bs4Dash
Attaching package: 'bs4Dash'
The following object is masked from 'package:graphics':
box
Loading required package: shiny
Attaching package: 'shiny'
The following objects are masked from 'package:bs4Dash':
actionButton, column, insertTab, navbarMenu, tabsetPanel
> library(terra)
terra 1.8.86
Attaching package: 'terra'
The following objects are masked from 'package:testthat':
compare, describe
> library(sf)
Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE
>
> test_check("glossa")
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train_0 train_1 test_0 test_1
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Saving _problems/test-process_layers-18.R
dist is assumed to be in decimal degrees (arc_degrees).
dist is assumed to be in decimal degrees (arc_degrees).
although coordinates are longitude/latitude, st_difference assumes that they
are planar
although coordinates are longitude/latitude, st_difference assumes that they
are planar
Running thinning with method 'precision' and thinning value 1
Running thinning with method 'precision' and thinning value 1
Running thinning with method 'distance' and thinning value 5e+05
Running thinning with method 'grid' and thinning value 0.05
Saving _problems/test-process_presence_absence-100.R
Running thinning with method 'precision' and thinning value 3
Saving _problems/test-read_validate_files-88.R
Saving _problems/test-read_validate_files-93.R
Saving _problems/test-read_validate_files-114.R
Saving _problems/test-utils-38.R
[ FAIL 6 | WARN 11 | SKIP 12 | PASS 84 ]
══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-glossa_analysis.R:5:3', 'test-process_layers.R:5:3',
'test-process_polygon.R:5:3', 'test-read_validate_files.R:5:3',
'test-read_validate_files.R:18:3', 'test-read_validate_files.R:30:3',
'test-read_validate_files.R:42:3', 'test-read_validate_files.R:54:3',
'test-read_validate_files.R:78:3', 'test-read_validate_files.R:104:3',
'test-utils.R:4:3'
• {flexsdm} is not installed (1): 'test-generate_pseudo_absences.R:98:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-process_layers.R:18:1'): (code run outside of `test_that()`) ───
Error: [rast] empty srs
Backtrace:
▆
1. ├─terra::rast(raster_data, ext = c(-123, -121, 36, 38), crs = "epsg:4326") at test-process_layers.R:18:1
2. └─terra::rast(raster_data, ext = c(-123, -121, 36, 38), crs = "epsg:4326")
3. └─terra (local) .local(x, ...)
4. ├─terra::rast(nrows = nrow(x), ncols = ncol(x), crs = crs, extent = extent)
5. └─terra::rast(nrows = nrow(x), ncols = ncol(x), crs = crs, extent = extent)
6. └─terra (local) .local(x = x, ...)
7. └─terra:::new_rast(...)
8. └─terra:::messages(r, "rast")
9. └─terra:::error(f, x@pntr$getError())
── Error ('test-process_presence_absence.R:100:3'): Grid thinning reduces to one per cell ──
Error: [rast] empty srs
Backtrace:
▆
1. └─glossa::clean_coordinates(...) at test-process_presence_absence.R:100:3
2. └─GeoThinneR::thin_points(...)
3. └─GeoThinneR (local) perform_thinning(group_data)
4. └─GeoThinneR::grid_thinning(...)
5. ├─terra::rast(...)
6. └─terra::rast(...)
7. └─terra (local) .local(x = x, ...)
8. └─terra:::new_rast(...)
9. └─terra:::messages(r, "rast")
10. └─terra:::error(f, x@pntr$getError())
── Error ('test-read_validate_files.R:88:3'): read_layers_zip loads layers correctly ──
Error: [project] cannot get output boundaries for the target crs
Backtrace:
▆
1. └─glossa::read_layers_zip(fit_layers, extend = TRUE, first_layer = TRUE) at test-read_validate_files.R:88:3
2. └─base::lapply(layers, function(x) terra::project(x, "epsg:4326"))
3. └─glossa (local) FUN(X[[i]], ...)
4. ├─terra::project(x, "epsg:4326")
5. └─terra::project(x, "epsg:4326")
6. └─terra (local) .local(x, ...)
7. └─terra:::messages(x, "project")
8. └─terra:::error(f, x@pntr$getError())
── Error ('test-read_validate_files.R:93:3'): read_layers_zip loads layers correctly ──
Error: [project] cannot get output boundaries for the target crs
Backtrace:
▆
1. └─glossa::read_layers_zip(fit_layers, extend = FALSE, first_layer = FALSE) at test-read_validate_files.R:93:3
2. └─base::lapply(layers, function(x) terra::project(x, "epsg:4326"))
3. └─glossa (local) FUN(X[[i]], ...)
4. ├─terra::project(x, "epsg:4326")
5. └─terra::project(x, "epsg:4326")
6. └─terra (local) .local(x, ...)
7. └─terra:::messages(x, "project")
8. └─terra:::error(f, x@pntr$getError())
── Error ('test-read_validate_files.R:114:3'): validate_layers_zip validates layers correctly ──
Error: [project] cannot get output boundaries for the target crs
Backtrace:
▆
1. ├─base::suppressWarnings(validate_layers_zip(fit_layers)) at test-read_validate_files.R:114:3
2. │ └─base::withCallingHandlers(...)
3. └─glossa::validate_layers_zip(fit_layers)
4. └─base::lapply(layers, function(layer) terra::project(layer, "epsg:4326"))
5. └─glossa (local) FUN(X[[i]], ...)
6. ├─terra::project(layer, "epsg:4326")
7. └─terra::project(layer, "epsg:4326")
8. └─terra (local) .local(x, ...)
9. └─terra:::messages(x, "project")
10. └─terra:::error(f, x@pntr$getError())
── Error ('test-utils.R:38:3'): create_coords_layer generates correct coordinate layers ──
Error: [rast] empty srs
Backtrace:
▆
1. ├─terra::rast(...) at test-utils.R:38:3
2. └─terra::rast(...)
3. └─terra (local) .local(x = x, ...)
4. └─terra:::new_rast(...)
5. └─terra:::messages(r, "rast")
6. └─terra:::error(f, x@pntr$getError())
[ FAIL 6 | WARN 11 | SKIP 12 | PASS 84 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64