CRAN Package Check Results for Maintainer ‘Henrik Bengtsson <henrikb at braju.com>’

Last updated on 2026-04-06 01:55:42 CEST.

Package ERROR NOTE OK
ACNE 14
aroma.affymetrix 3 11
aroma.apd 14
aroma.cn 14
aroma.core 3 11
calmate 2 12
dChipIO 14
doFuture 14
future 14
future.apply 14
future.batchtools 14
future.callr 14
future.mirai 14
future.tests 14
futureverse 14
futurize 1 1 12
globals 14
listenv 14
matrixStats 14
parallelly 14
port4me 14
profmem 14
progressr 14
PSCBS 14
R.cache 14
R.devices 14
R.filesets 14
R.huge 14
R.matlab 14
R.methodsS3 2 12
R.oo 14
R.rsp 14
R.utils 14
seguid 14
startup 14
TopDom 14

Package ACNE

Current CRAN status: OK: 14

Package aroma.affymetrix

Current CRAN status: NOTE: 3, OK: 11

Version: 3.2.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘AffymetrixDataTestFiles’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 3.2.3
Check: installed package size
Result: NOTE installed size is 6.2Mb sub-directories of 1Mb or more: R 3.1Mb help 1.1Mb testScripts 1.1Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package aroma.apd

Current CRAN status: OK: 14

Package aroma.cn

Current CRAN status: OK: 14

Package aroma.core

Current CRAN status: NOTE: 3, OK: 11

Version: 3.3.2
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'sfit', 'expectile', 'HaarSeg', 'mpcbs' Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package calmate

Current CRAN status: NOTE: 2, OK: 12

Version: 0.13.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package dChipIO

Current CRAN status: OK: 14

Package doFuture

Current CRAN status: OK: 14

Package future

Current CRAN status: OK: 14

Package future.apply

Current CRAN status: OK: 14

Package future.batchtools

Current CRAN status: OK: 14

Package future.callr

Current CRAN status: OK: 14

Package future.mirai

Current CRAN status: OK: 14

Package future.tests

Current CRAN status: OK: 14

Package futureverse

Current CRAN status: OK: 14

Package futurize

Current CRAN status: ERROR: 1, NOTE: 1, OK: 12

Version: 0.2.0
Check: tests
Result: ERROR Running ‘test-api.R’ [27s/34s] Running ‘test-doFuture-foreach_dofuture,errors.R’ [12s/27s] Running ‘test-doFuture-foreach_dofuture,globals.R’ [16s/26s] Running ‘test-doFuture-foreach_dofuture,nested_colon.R’ [10s/28s] Running ‘test-doFuture-foreach_dofuture,nested_dofuture.R’ [10s/35s] Running ‘test-doFuture-foreach_dofuture,rng.R’ [5s/9s] Running ‘test-doFuture-foreach_dofuture-options,nested.R’ [6s/11s] Running ‘test-doFuture-foreach_dofuture.R’ [3s/6s] Running ‘test-doFuture-times.R’ [3s/6s] Running ‘test-furrr-future_imap.R’ [2s/2s] Running ‘test-furrr-future_invoke-map.R’ [1s/2s] Running ‘test-furrr-future_map.R’ [2s/3s] Running ‘test-furrr-future_map2.R’ [2s/3s] Running ‘test-furrr-future_modify.R’ [2s/3s] Running ‘test-furrr-future_pmap.R’ [2s/2s] Running ‘test-furrr-future_walk.R’ [1s/2s] Running ‘test-future.apply-future_Filter.R’ [1s/3s] Running ‘test-future.apply-future_apply.R’ [8s/11s] Running ‘test-future.apply-future_by.R’ [3s/6s] Running ‘test-future.apply-future_eapply.R’ [2s/4s] Running ‘test-future.apply-future_kernapply.R’ [2s/3s] Running ‘test-future.apply-future_lapply,RNG.R’ [24s/47s] Running ‘test-future.apply-future_lapply,globals.R’ [7s/14s] Running ‘test-future.apply-future_lapply.R’ [18s/27s] Running ‘test-future.apply-future_mapply,globals.R’ [4s/8s] Running ‘test-future.apply-future_mapply.R’ [5s/9s] Running ‘test-future.apply-future_replicate.R’ [3s/5s] Running ‘test-future.apply-future_sapply.R’ [14s/24s] Running ‘test-future.apply-future_tapply.R’ [2s/2s] Running ‘test-future.apply-future_vapply.R’ [8s/13s] Running ‘test-future.apply-globals,tricky2.R’ [2s/5s] Running ‘test-future.apply-globals,tricky_recursive.R’ [2s/4s] Running ‘test-future.apply-options,nested.R’ [3s/6s] Running ‘test-future.apply-stdout.R’ [10s/19s] Running ‘test-futurize-BiocParallel.R’ [9s/15s] Running ‘test-futurize-DESeq2.R’ [1s/1s] Running ‘test-futurize-GSVA.R’ [1s/1s] Running ‘test-futurize-GenomicAlignments.R’ [1s/1s] Running ‘test-futurize-Rsamtools.R’ [11s/30s] Running ‘test-futurize-SimDesign.R’ [5s/12s] Running ‘test-futurize-SingleCellExperiment.R’ [1s/1s] Running ‘test-futurize-TSP.R’ [3s/5s] Running ‘test-futurize-base-stats.R’ [11s/27s] Running ‘test-futurize-boot.R’ [2s/3s] Running ‘test-futurize-caret.R’ [16s/29s] Running ‘test-futurize-crossmap.R’ [3s/5s] Running ‘test-futurize-fgsea.R’ [1s/1s] Running ‘test-futurize-foreach.R’ [3s/6s] Running ‘test-futurize-fwb.R’ [3s/6s] Running ‘test-futurize-gamlss.R’ [4s/8s] Running ‘test-futurize-glmmTMB.R’ [1s/1s] Running ‘test-futurize-glmnet.R’ [7s/16s] Running ‘test-futurize-kernelshap.R’ [2s/4s] Running ‘test-futurize-lme4.R’ [7s/16s] Running ‘test-futurize-metafor.R’ [4s/10s] Running ‘test-futurize-mgcv.R’ [5s/11s] Running ‘test-futurize-partykit.R’ [7s/15s] Running ‘test-futurize-pbapply.R’ [3s/8s] Running ‘test-futurize-plyr.R’ [8s/14s] Running ‘test-futurize-purrr.R’ [3s/7s] Running ‘test-futurize-riskRegression.R’ [1s/1s] Running ‘test-futurize-scater.R’ [1s/1s] Running ‘test-futurize-scuttle.R’ [1s/1s] Running ‘test-futurize-seriation.R’ [9s/15s] Running ‘test-futurize-shapr.R’ [4s/9s] Running ‘test-futurize-strucchange.R’ [2s/5s] Running ‘test-futurize-sva.R’ [1s/1s] Running ‘test-futurize-tm.R’ [2s/5s] Running ‘test-futurize-vegan.R’ [12s/20s] Running ‘test-futurize-wrapped.R’ [2s/6s] Running ‘test-internals-futurize.R’ [1s/2s] Running ‘test-internals-make_options_for_nnn.R’ [1s/1s] Running ‘test-internals.R’ [1s/1s] Running the tests in ‘tests/test-furrr-future_imap.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-furrr-future_imap.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("furrr-future_imap") Test 'furrr-future_imap' ... chr "none" > if (requireNamespace("purrr") && requireNamespace("furrr")) { + library(futurize) + library(purrr) + message("imap functions work with u ..." ... [TRUNCATED] Loading required namespace: purrr Loading required namespace: furrr Loading required package: future imap functions work with unnamed input Error in get_transpiler(expr, envir = envir, type = type, what = what, : Do not know how to futurize function: imap_raw() Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> stopifnot -> identical -> futurize -> transpile -> get_transpiler Execution halted Running the tests in ‘tests/test-furrr-future_invoke-map.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-furrr-future_invoke-map.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("furrr-future_invoke-map") Test 'furrr-future_invoke-map' ... chr "none" > if (requireNamespace("purrr") && requireNamespace("furrr")) { + library(futurize) + library(purrr) + message("future_invoke_map() matche ..." ... [TRUNCATED] Loading required namespace: purrr Loading required namespace: furrr Loading required package: future future_invoke_map() matches invoke_map() for simple cases Error in get_transpiler(expr, envir = envir, type = type, what = what, : Do not know how to futurize function: invoke_map() Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> stopifnot -> identical -> futurize -> transpile -> get_transpiler Execution halted Running the tests in ‘tests/test-furrr-future_map.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-furrr-future_map.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("furrr-future_map") Test 'furrr-future_map' ... chr "none" > if (requireNamespace("purrr") && requireNamespace("furrr")) { + library(futurize) + library(purrr) + message("future_map() matches map() ..." ... [TRUNCATED] Loading required namespace: purrr Loading required namespace: furrr Loading required package: future future_map() matches map() for simple cases names of `.x` are retained named empty input makes named empty output future_map_dbl() works future_map_int() works future_map_lgl() works future_map_chr() works future_map_raw() works Error in get_transpiler(expr, envir = envir, type = type, what = what, : Do not know how to futurize function: map_raw() Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> stopifnot -> identical -> futurize -> transpile -> get_transpiler Execution halted Running the tests in ‘tests/test-furrr-future_map2.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-furrr-future_map2.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("furrr-future_map2") Test 'furrr-future_map2' ... chr "none" > if (requireNamespace("purrr") && requireNamespace("furrr")) { + library(futurize) + library(purrr) + message("future_map2() matches map2 ..." ... [TRUNCATED] Loading required namespace: purrr Loading required namespace: furrr Loading required package: future future_map2() matches map2() for simple cases names of `.x` are retained named empty input makes named empty output map2_dbl() |> futurize() works future_map2_int() works future_map2_lgl() works future_map2_chr() works future_map2_raw() works Error in get_transpiler(expr, envir = envir, type = type, what = what, : Do not know how to futurize function: map2_raw() Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> stopifnot -> identical -> futurize -> transpile -> get_transpiler Execution halted Running the tests in ‘tests/test-furrr-future_pmap.R’ failed. Complete output: > #! /usr/bin/env Rscript > ## This runs testme test script inst/testme/test-furrr-future_pmap.R > ## Don't edit - it was autogenerated by inst/testme/deploy.R > futurize:::testme("furrr-future_pmap") Test 'furrr-future_pmap' ... chr "none" > if (requireNamespace("purrr") && requireNamespace("furrr")) { + library(futurize) + library(purrr) + message("future_pmap() matches pmap ..." ... [TRUNCATED] Loading required namespace: purrr Loading required namespace: furrr Loading required package: future future_pmap() matches pmap() for simple cases names of `.x` are retained named empty input makes named empty output future_pmap_dbl() works future_pmap_int() works future_pmap_lgl() works future_pmap_chr() works future_pmap_raw() works Error in get_transpiler(expr, envir = envir, type = type, what = what, : Do not know how to futurize function: pmap_raw() Calls: <Anonymous> -> source -> withVisible -> eval -> eval -> main -> testme_run_test -> source -> withVisible -> eval -> eval -> stopifnot -> identical -> futurize -> transpile -> get_transpiler Execution halted Flavor: r-patched-linux-x86_64

Version: 0.2.0
Check: package dependencies
Result: NOTE Packages suggested but not available for checking: 'GSVA', 'scater' Flavor: r-oldrel-macos-arm64

Package globals

Current CRAN status: OK: 14

Package listenv

Current CRAN status: OK: 14

Package matrixStats

Current CRAN status: OK: 14

Package parallelly

Current CRAN status: OK: 14

Package port4me

Current CRAN status: OK: 14

Package profmem

Current CRAN status: OK: 14

Package progressr

Current CRAN status: OK: 14

Package PSCBS

Current CRAN status: OK: 14

Package R.cache

Current CRAN status: OK: 14

Package R.devices

Current CRAN status: OK: 14

Package R.filesets

Current CRAN status: OK: 14

Package R.huge

Current CRAN status: OK: 14

Package R.matlab

Current CRAN status: NOTE: 14

Version: 3.7.0
Check: Rd files
Result: NOTE checkRd: (-1) setOption.Matlab.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) setOption.Matlab.Rd:40-41: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package R.methodsS3

Current CRAN status: NOTE: 2, OK: 12

Version: 1.8.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package R.oo

Current CRAN status: OK: 14

Package R.rsp

Current CRAN status: OK: 14

Package R.utils

Current CRAN status: OK: 14

Package seguid

Current CRAN status: OK: 14

Package startup

Current CRAN status: OK: 14

Package TopDom

Current CRAN status: NOTE: 14

Version: 0.10.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Henrik Bengtsson <henrikb@braju.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.10.1
Check: Rd files
Result: NOTE checkRd: (-1) TopDom.Rd:21: Lost braces; missing escapes or markup? 21 | Recommended range is in {5, ..., 20}.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64