CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2026-02-01 02:50:36 CET.

Package	NOTE	OK
BimodalIndex		13
ClassComparison		13
ClassDiscovery		13
CloneSeeker	5	8
CrossValidate		13
GenAlgo		13
integIRTy		13
Mercator		13
Modeler		13
NameNeedle		13
NewmanOmics		13
oompaBase		13
oompaData		13
PCDimension		13
plasma		13
Polychrome		13
PreProcess		13
RCytoGPS	1	12
RPointCloud		13
SIBERG		13
SillyPutty		13
SVAlignR		13
TailRank		13
Thresher		13
Umpire		13
WayFindR		13

Package BimodalIndex

Current CRAN status: OK: 13

Package ClassComparison

Current CRAN status: OK: 13

Package ClassDiscovery

Current CRAN status: OK: 13

Package CloneSeeker

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/3s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [3s/4s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [35s/42s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [96s/144s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/2s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [2s/2s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [22s/31s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [56s/68s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [4s/12s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [62s/207s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [170s/460s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [4s/18s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [4s/15s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [62s/221s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [3m/11m] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.13
Check: tests
Result: NOTE Running 'test01-Simplex.R' [2s] Comparing 'test01-Simplex.Rout' to 'test01-Simplex.Rout.save' ... OK Running 'test02-WV.R' [2s] Comparing 'test02-WV.Rout' to 'test02-WV.Rout.save' ... OK Running 'test03-simulate.R' [28s] Comparing 'test03-simulate.Rout' to 'test03-simulate.Rout.save' ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 232,236c232,236 < Min. : 12.00 Length :1e+06 < 1st Qu.: 61.00 N.unique :1e+00 < Median : 70.00 N.blank :0e+00 < Mean : 70.24 Min.nchar:8e+00 < 3rd Qu.: 80.00 Max.nchar:8e+00 --- > Min. : 12.00 Length:1000000 > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running 'test04-algorithm.R' [73s] Comparing 'test04-algorithm.Rout' to 'test04-algorithm.Rout.save' ... 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar: Inf < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:-Inf --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 244,246d243 < Warning messages: < 1: In min(ncs) : no non-missing arguments to min; returning Inf < 2: In max(ncs) : no non-missing arguments to max; returning -Inf Flavor: r-devel-windows-x86_64

Package CrossValidate

Current CRAN status: OK: 13

Package GenAlgo

Current CRAN status: OK: 13

Package integIRTy

Current CRAN status: OK: 13

Package Mercator

Current CRAN status: OK: 13

Package Modeler

Current CRAN status: OK: 13

Package NameNeedle

Current CRAN status: OK: 13

Package NewmanOmics

Current CRAN status: OK: 13

Package oompaBase

Current CRAN status: OK: 13

Package oompaData

Current CRAN status: OK: 13

Package PCDimension

Current CRAN status: OK: 13

Package plasma

Current CRAN status: OK: 13

Package Polychrome

Current CRAN status: OK: 13

Package PreProcess

Current CRAN status: OK: 13

Package RCytoGPS

Current CRAN status: NOTE: 1, OK: 12

Version: 1.2.9
Check: tests
Result: NOTE Running ‘test01-chrom.R’ [0s/1s] Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ [0s/1s] Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [29s/36s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ [1s/2s] Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK Running ‘test101-preclean.R’ [0s/1s] Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ... 22c22 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's 25c25 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's Running ‘testclip.R’ [1s/1s] Flavor: r-devel-linux-x86_64-debian-clang

Package RPointCloud

Current CRAN status: OK: 13

Package SIBERG

Current CRAN status: OK: 13

Package SillyPutty

Current CRAN status: OK: 13

Package SVAlignR

Current CRAN status: OK: 13

Package TailRank

Current CRAN status: OK: 13

Package Thresher

Current CRAN status: OK: 13

Package Umpire

Current CRAN status: OK: 13

Package WayFindR

Current CRAN status: OK: 13