Last updated on 2026-10-24 01:51:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 11.12 | 214.12 | 225.24 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 8.44 | 152.22 | 160.66 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 10.00 | 179.79 | 189.79 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 155.25 | OK | |||
| r-devel-windows-x86_64 | 0.1.2 | 13.00 | 235.00 | 248.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 12.67 | 202.04 | 214.71 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 10.65 | 202.29 | 212.94 | OK | |
| r-release-macos-arm64 | 0.1.2 | 3.00 | 61.00 | 64.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 8.00 | 266.00 | 274.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 13.00 | 220.00 | 233.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.2 | 7.00 | 205.00 | 212.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.2 | 18.00 | 287.00 | 305.00 | OK |
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘maicplus-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ph_diagplot
> ### Title: Diagnosis plot of proportional hazard assumption for anchored
> ### and unanchored
> ### Aliases: ph_diagplot
>
> ### ** Examples
>
> # unanchored example using ph_diagplot
> data(weighted_sat)
> data(adtte_sat)
> data(pseudo_ipd_sat)
>
> ph_diagplot(
+ weights_object = weighted_sat,
+ tte_ipd = adtte_sat,
+ tte_pseudo_ipd = pseudo_ipd_sat,
+ trt_var_ipd = "ARM",
+ trt_var_agd = "ARM",
+ trt_ipd = "A",
+ trt_agd = "B",
+ trt_common = NULL,
+ endpoint_name = "Overall Survival",
+ time_scale = "week",
+ zph_transform = "log",
+ zph_log_hazard = TRUE
+ )
Error in a$specials[[i]] : subscript out of bounds
Calls: ph_diagplot ... model.matrix -> model.matrix.coxph -> delete.response -> off
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
kmplot2 10.436 0.245 12.247
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> pkg_name <- "maicplus"
> library(pkg_name, character.only = TRUE)
> testthat::test_check(pkg_name)
result pvalue
"-0.17[-0.61; 0.28]" "0.535"
NULL
NULL
NULL
NULL
Saving _problems/test-plot_km-143.R
Saving _problems/test-plot_km-162.R
Saving _problems/test-plot_km-182.R
Saving _problems/test-plot_km-201.R
Saving _problems/test-plot_km-247.R
Saving _problems/test-plot_km-258.R
Ignoring unknown labels:
* colour : "Treatment"
Ignoring unknown labels:
* colour : "Treatment"
Ignoring unknown labels:
* colour : "Treatment"
Ignoring unknown labels:
* colour : "Treatment"
Ignoring unknown labels:
* colour : "Treatment"
Ignoring unknown labels:
* colour : "Treatment"
[ FAIL 6 | WARN 0 | SKIP 14 | PASS 82 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════
• On CRAN (14): 'test-maic_anchored.R:1:1', 'test-maic_anchored.R:69:1',
'test-maic_unanchored.R:1:1', 'test-maic_unanchored.R:164:1',
'test-matching.R:192:1', 'test-matching.R:220:1', 'test-matching.R:233:1',
'test-matching.R:261:1', 'test-plot_km.R:1:1', 'test-plot_km.R:32:1',
'test-plot_km.R:64:1', 'test-plot_km.R:96:1', 'test-plot_km.R:206:1',
'test-plot_km2.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_km.R:128:3'): ph_diagplot works for anchored data ───────
Expected `ph_diagplot(...)` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
── Error ('test-plot_km.R:149:7'): ph_diagplot works for anchored data ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─vdiffr::expect_doppelganger(...) at test-plot_km.R:146:3
2. └─vdiffr (local) writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.function(plot, title)
5. └─maicplus (local) p()
6. └─maicplus::ph_diagplot(...) at test-plot_km.R:149:7
7. └─survival::cox.zph(coxobj2, transform = zph_transform, global = FALSE)
8. └─survival:::coxph.getdata(...)
9. ├─stats::model.matrix(fit, data = mf)
10. └─survival:::model.matrix.coxph(fit, data = mf)
11. └─stats::delete.response(object$terms)
12. └─stats (local) off(a$specials[[i]])
── Failure ('test-plot_km.R:168:3'): ph_diagplot works for unanchored data ─────
Expected `ph_diagplot(...)` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
── Error ('test-plot_km.R:188:7'): ph_diagplot works for unanchored data ───────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─vdiffr::expect_doppelganger(...) at test-plot_km.R:185:3
2. └─vdiffr (local) writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.function(plot, title)
5. └─maicplus (local) p()
6. └─maicplus::ph_diagplot(...) at test-plot_km.R:188:7
7. └─survival::cox.zph(coxobj2, transform = zph_transform, global = FALSE)
8. └─survival:::coxph.getdata(...)
9. ├─stats::model.matrix(fit, data = mf)
10. └─survival:::model.matrix.coxph(fit, data = mf)
11. └─stats::delete.response(object$terms)
12. └─stats (local) off(a$specials[[i]])
── Failure ('test-plot_km.R:241:3'): ph_diagplot_schoenfeld works without error ──
Expected `ph_diagplot_schoenfeld(...)` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
── Error ('test-plot_km.R:254:7'): ph_diagplot_schoenfeld works without error ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─vdiffr::expect_doppelganger(...) at test-plot_km.R:251:3
2. └─vdiffr (local) writer(fig, testcase, title)
3. ├─vdiffr:::print_plot(plot, title)
4. └─vdiffr:::print_plot.function(plot, title)
5. └─maicplus (local) p()
6. └─maicplus::ph_diagplot_schoenfeld(...) at test-plot_km.R:254:7
7. ├─stats::residuals(coxobj, type = "schoenfeld")
8. └─survival:::residuals.coxph(coxobj, type = "schoenfeld")
9. └─survival:::coxph.getdata(object, y = TRUE, x = TRUE, stratax = TRUE)
10. ├─stats::model.matrix(fit, data = mf)
11. └─survival:::model.matrix.coxph(fit, data = mf)
12. └─stats::delete.response(object$terms)
13. └─stats (local) off(a$specials[[i]])
[ FAIL 6 | WARN 0 | SKIP 14 | PASS 82 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc