Last updated on 2026-01-20 02:51:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.42 | 255.72 | 269.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.81 | 301.57 | 312.38 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 29.00 | 323.15 | 352.15 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 30.00 | 416.93 | 446.93 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 195.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.45 | 276.00 | 291.45 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 13.99 | 270.09 | 284.08 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 212.00 | 222.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 22.00 | 200.00 | 222.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 11.00 | 356.00 | 367.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 243.00 | 267.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/171s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.551, system: 0.046, elapsed: 1.895 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.634, system: 0.097, elapsed: 12.698 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.017, elapsed: 0.430 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.849, system: 0.683, elapsed: 18.308 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.005, elapsed: 0.177 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.051, system: 0.872, elapsed: 34.177 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.672, system: 0.052, elapsed: 2.397 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.390, system: 0.095, elapsed: 10.788 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.016, elapsed: 0.294 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.280, system: 0.745, elapsed: 11.631 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.187 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.320, system: 0.940, elapsed: 26.064 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.564, system: 0.038, elapsed: 4.060 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.672, system: 0.083, elapsed: 22.235 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.315, system: 0.015, elapsed: 1.351 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.903, system: 0.709, elapsed: 35.171 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.009, elapsed: 0.237 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.260, system: 0.343, elapsed: 1.094 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.586, system: 1.237, elapsed: 65.216 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.572, system: 0.042, elapsed: 2.044 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.654, system: 0.117, elapsed: 12.505 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.016, elapsed: 0.406 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.566, system: 0.908, elapsed: 11.306 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.003, elapsed: 0.176 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 18.266, system: 1.427, elapsed: 12.209 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 39.304, system: 2.555, elapsed: 39.493 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/236s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.623, system: 0.043, elapsed: 3.873 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.596, system: 0.081, elapsed: 25.039 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.016, elapsed: 0.691 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.293, system: 0.403, elapsed: 12.301 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.003, elapsed: 0.440 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.460, system: 0.573, elapsed: 43.822 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.656, system: 0.032, elapsed: 4.778 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.659, system: 0.088, elapsed: 26.812 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.014, elapsed: 0.551 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.324, system: 0.401, elapsed: 13.244 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.558 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.577, system: 0.558, elapsed: 47.459 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.605, system: 0.033, elapsed: 4.845 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.706, system: 0.083, elapsed: 28.334 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.012, elapsed: 0.524 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.377, system: 0.405, elapsed: 13.055 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.003, elapsed: 0.527 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.205, system: 0.324, elapsed: 2.089 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.935, system: 0.885, elapsed: 51.300 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.648, system: 0.033, elapsed: 4.863 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.662, system: 0.054, elapsed: 27.154 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.014, elapsed: 0.663 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.304, system: 0.415, elapsed: 12.955 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.004, elapsed: 0.547 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.787, system: 0.532, elapsed: 31.422 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.451, system: 1.074, elapsed: 79.619 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64