Last updated on 2026-06-07 02:50:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 19.20 | 126.45 | 145.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 14.97 | 59.52 | 74.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 22.00 | 253.36 | 275.36 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 40.00 | 206.40 | 246.40 | OK | |
| r-devel-windows-x86_64 | 0.2.0 | 21.00 | 178.00 | 199.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 19.79 | 117.47 | 137.26 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 21.82 | 117.90 | 139.72 | OK | |
| r-release-macos-arm64 | 0.2.0 | 5.00 | 24.00 | 29.00 | OK | |
| r-release-macos-x86_64 | 0.2.0 | 17.00 | 100.00 | 117.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 24.00 | 177.00 | 201.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 5.00 | 31.00 | 36.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.0 | 19.00 | 116.00 | 135.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 25.00 | 188.00 | 213.00 | OK |
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [3s/2s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if (requireNamespace("tinytest", quietly = TRUE)) {
+
+ test_tmat_matches_expected <- function(tmat) {
+ # Check for out of bounds values
+ tinytest::expect_false(any(tmat < 0))
+ tinytest::expect_false(any(tmat > 1))
+ }
+
+ tinytest::test_package("measles")
+ }
Loading required package: epiworldR
Thank you for using epiworldR! Please consider citing it in your work.
You can find the citation information by running
citation("epiworldR")
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 0 tests
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 1 tests OK _________________________________________________________________________
|||||||Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|||||||
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 1 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 2 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 3 tests OK
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 4 tests OK _________________________________________________________________________
|||||||Running the model...
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| done.
|||||||
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 4 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 5 tests OK
test-contact-matrix.R......... 6 tests OK
test-contact-matrix.R......... 7 tests OK
test-contact-matrix.R......... 8 tests OK 88ms
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests
test-hospitalization.R........ 0 tests Starting multiple runs (1000) using 2 thread(s)
_________________________________________________________________________
_________________________________________________________________________
||||||||||||||||||||||||||||||||||||||||||||||terminate called after throwing an instance of 'std::runtime_error'
what(): Could not open file "/tmp/RtmpRq1OGj/epiworldR-11c0fb7c2701bf/00858-episim_transmission.csv" for writing.
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘short-creek.qmd’ using html
<1b>[31m
processing file: short-creek.qmd
<1b>[39m<1b>[31mterminate called after throwing an instance of '<1b>[39m<1b>[31mstd::runtime_error'
what(): Could not open file "/tmp/RtmphSfhIW/epiworldR-11cfc569954a14/00072-episim_outbreak_size.csv" for writing.
<1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Error: processing vignette 'short-creek.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: short-creek.qmd
<1b>[31mterminate called after throwing an instance of 'std::runtime_error'<1b>[39m
what(): Could not open file
"/tmp/RtmphSfhIW/epiworldR-11cfc569954a14/00072-episim_outbreak_size.csv" for
writing.
<1b>[33mWARN: Error encountered when rendering files<1b>[39m
Caused by error in `processx::run()`:
! System command 'quarto' failed
--- failed re-building ‘short-creek.qmd’
SUMMARY: processing the following file failed:
‘short-creek.qmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc