Last updated on 2025-12-03 01:50:03 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 28.00 | 68.08 | 96.08 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 17.00 | 71.25 | 88.25 | OK | |
| r-release-macos-arm64 | 0.2.0 | 1.00 | 22.00 | 23.00 | OK | |
| r-release-macos-x86_64 | 0.2.0 | 4.00 | 64.00 | 68.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | 1.00 | 28.00 | 29.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.0 | 3.00 | 63.00 | 66.00 | OK |
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/80s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(motherduck)
> library(DBI)
> library(openxlsx)
>
> test_check("motherduck")
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
v Inserted into existing database "memory"
v Created new schema "test_schema"
> Current role: `duckdb`
-- Status: ---------------------------------------------------------------------
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "test_schema"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
> Current role: `duckdb`
> Current role: `duckdb`
> Current role: `duckdb`
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 1
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 3
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 3
* # Tables in this catalog & schema you have access to: 3
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 3
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 3
* # Tables in this catalog & schema you have access to: 3
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
Note: method with signature 'DBIConnection#Id' chosen for function 'dbExistsTable',
target signature 'duckdb_connection#Id'.
"duckdb_connection#ANY" would also be valid
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report:
* Deleted "delete_table" from "[database_name]" in "main"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
v Inserted into existing database "memory"
v Created new schema "test_schema"
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 1
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 1
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
* Deleted "test_schema" schema and 1 tables
-- Status: ---------------------------------------------------------------------
-- Connection Status Report: --
! You are not connected to MotherDuck
-- User Report: --
* User Name: "duckdb"
* Role: "duckdb"
-- Catalog Report: --
* Current Database: "memory"
* Current Schema: "main"
* # Total Catalogs you have access to: 3
* # Total Tables you have access to: 0
* # Total Shares you have access to: 0
* # Tables in this catalog you have access to: 0
* # Tables in this catalog & schema you have access to: 0
-- Action Report: --
* Deleted "test_schema" schema and 1 tables
-- Action Report: --
v Inserted into existing database "memory"
v Using existing schema "main"
v Overwrite existing table "mtcars_csv"
*** caught segfault ***
address 0x1c11000119, cause 'memory not mapped'
Traceback:
1: rapi_execute(stmt, convert_opts)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, convert_opts), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, duckdb_convert_opts_impl(res@connection@convert_opts, arrow = res@arrow))
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(.con, glue::glue("LOAD {x};"))
17: DBI::dbExecute(.con, glue::glue("LOAD {x};"))
18: .f(.x[[i]], ...)
19: .Primitive(".Call")(list(name = "map_impl", address = <pointer: 0x559393cc7eb0>, dll = list(name = "purrr", path = "/data/gannet/ripley/R/test-clang/purrr/libs/purrr.so", dynamicLookup = FALSE, handle = <pointer: 0x559393d4e850>, info = <pointer: 0x559391c76340>, forceSymbols = FALSE), numParameters = 6L), <environment>, "list", FALSE, 1L, NULL, 1L)
20: call_with_cleanup(map_impl, environment(), .type, .progress, n, names, i)
21: withCallingHandlers(expr, error = function(cnd) { if (i == 0L) { } else { message <- c(i = "In index: {i}.") if (!is.null(names) && !is.na(names[[i]]) && names[[i]] != "") { name <- names[[i]] message <- c(message, i = "With name: {name}.") } else { name <- NULL } cli::cli_abort(message, location = i, name = name, parent = cnd, call = error_call, class = "purrr_error_indexed") }})
22: with_indexed_errors(i = i, names = names, error_call = .purrr_error_call, call_with_cleanup(map_impl, environment(), .type, .progress, n, names, i))
23: map_("list", .x, .f, ..., .progress = .progress)
24: purrr::map(ext_lst$valid_ext, function(x) DBI::dbExecute(.con, glue::glue("LOAD {x};")))
25: load_extensions(.con, "excel")
26: read_excel(.con = con_db, to_database_name = "memory", to_schema_name = "main", to_table_name = "mtcars_excel", file_path = file_name, write_type = "overwrite")
27: eval(code, test_env)
28: eval(code, test_env)
29: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
30: doTryCatch(return(expr), name, parentenv, handler)
31: tryCatchOne(expr, names, parentenv, handlers[[1L]])
32: tryCatchList(expr, classes, parentenv, handlers)
33: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
34: doWithOneRestart(return(expr), restart)
35: withOneRestart(expr, restarts[[1L]])
36: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
37: test_code(code, parent.frame())
38: it("successfully reads a excel and copies table to database", { file_name <- tempfile() openxlsx::write.xlsx(mtcars, file_name) con_db <- DBI::dbConnect(duckdb::duckdb()) read_excel(.con = con_db, to_database_name = "memory", to_schema_name = "main", to_table_name = "mtcars_excel", file_path = file_name, write_type = "overwrite") list_of_tables <- dplyr::collect(list_all_tables(con_db)) testthat::expect_true(all(list_of_tables[["table_name"]] %in% "mtcars_excel")) DBI::dbDisconnect(con_db) })
39: eval(code, test_env)
40: eval(code, test_env)
41: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
42: doTryCatch(return(expr), name, parentenv, handler)
43: tryCatchOne(expr, names, parentenv, handlers[[1L]])
44: tryCatchList(expr, classes, parentenv, handlers)
45: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
46: doWithOneRestart(return(expr), restart)
47: withOneRestart(expr, restarts[[1L]])
48: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
49: test_code(code, parent.frame())
50: describe("read_excel", { it("successfully reads a excel and copies table to database", { file_name <- tempfile() openxlsx::write.xlsx(mtcars, file_name) con_db <- DBI::dbConnect(duckdb::duckdb()) read_excel(.con = con_db, to_database_name = "memory", to_schema_name = "main", to_table_name = "mtcars_excel", file_path = file_name, write_type = "overwrite") list_of_tables <- dplyr::collect(list_all_tables(con_db)) testthat::expect_true(all(list_of_tables[["table_name"]] %in% "mtcars_excel")) DBI::dbDisconnect(con_db) })})
51: eval(code, test_env)
52: eval(code, test_env)
53: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
58: doWithOneRestart(return(expr), restart)
59: withOneRestart(expr, restarts[[1L]])
60: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
61: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
62: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
63: FUN(X[[i]], ...)
64: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
65: doTryCatch(return(expr), name, parentenv, handler)
66: tryCatchOne(expr, names, parentenv, handlers[[1L]])
67: tryCatchList(expr, classes, parentenv, handlers)
68: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
69: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
70: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
71: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
72: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
73: test_check("motherduck")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang