Last updated on 2025-11-10 02:50:58 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 2.3.3 | 39.54 | 363.63 | 403.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.3.3 | 242.00 | 534.64 | 776.64 | OK | |
| r-devel-windows-x86_64 | 2.3.3 | 67.00 | 436.00 | 503.00 | ERROR | |
| r-release-linux-x86_64 | 2.3.3 | 56.96 | 433.31 | 490.27 | OK | |
| r-release-macos-arm64 | 2.3.3 | 33.00 | 237.00 | 270.00 | OK | |
| r-release-macos-x86_64 | 2.3.3 | 72.00 | 424.00 | 496.00 | OK | |
| r-release-windows-x86_64 | 2.3.3 | 66.00 | 440.00 | 506.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.3 | 34.00 | 227.00 | 261.00 | NOTE | |
| r-oldrel-macos-x86_64 | 2.3.3 | 58.00 | 502.00 | 560.00 | NOTE | |
| r-oldrel-windows-x86_64 | 2.3.3 | 76.00 | 555.00 | 631.00 | NOTE |
Version: 2.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'myTAI.Rmd' using rmarkdown
--- finished re-building 'myTAI.Rmd'
--- re-building 'other-strata.Rmd' using rmarkdown
--- finished re-building 'other-strata.Rmd'
--- re-building 'phylo-expression-object.Rmd' using rmarkdown
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
|
| | 0%
|
|======================================================================| 100%
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building 'phylo-expression-object.Rmd'
--- re-building 'phylostratigraphy.Rmd' using rmarkdown
--- finished re-building 'phylostratigraphy.Rmd'
--- re-building 'tai-breaker.Rmd' using rmarkdown
--- finished re-building 'tai-breaker.Rmd'
--- re-building 'tai-gallery.Rmd' using rmarkdown
--- finished re-building 'tai-gallery.Rmd'
--- re-building 'tai-stats.Rmd' using rmarkdown
--- finished re-building 'tai-stats.Rmd'
--- re-building 'tai-transform.Rmd' using rmarkdown
--- finished re-building 'tai-transform.Rmd'
--- re-building 'taxonomy.Rmd' using rmarkdown
Quitting from taxonomy.Rmd:218-222 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'taxonomy.Rmd' failed with diagnostics:
ℹ In argument: `name == organism`.
Caused by error:
! `..1` must be of size 1, not size 0.
--- failed re-building 'taxonomy.Rmd'
SUMMARY: processing the following file failed:
'taxonomy.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.3.3
Check: installed package size
Result: NOTE
installed size is 11.3Mb
sub-directories of 1Mb or more:
doc 6.4Mb
libs 3.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64