Last updated on 2025-04-14 02:52:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 7.52 | 107.63 | 115.15 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 5.59 | 74.78 | 80.37 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 206.85 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 194.21 | OK | |||
| r-devel-macos-arm64 | 1.1.2 | 58.00 | OK | |||
| r-devel-macos-x86_64 | 1.1.2 | 103.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.2 | 11.00 | 122.00 | 133.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 8.18 | 101.80 | 109.98 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 7.76 | 102.60 | 110.36 | OK | |
| r-release-macos-arm64 | 1.1.2 | 58.00 | OK | |||
| r-release-macos-x86_64 | 1.1.2 | 86.00 | OK | |||
| r-release-windows-x86_64 | 1.1.2 | 12.00 | 136.00 | 148.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.2 | 118.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.2 | 12.00 | 152.00 | 164.00 | OK |
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.r' [34s]
Running the tests in 'tests/testthat.r' failed.
Complete output:
> library(testthat)
> library(openVA)
────────────────────── Attaching packages for openVA 1.1.2 ─────────────────────
✔ InSilicoVA 1.4.0
✔ InterVA4 1.7.6
✔ InterVA5 1.1.3
✔ Tariff 1.0.5
── Optional packages (require manual installation if not attached) ─────────────
× nbc4va
If you need to use these methods, you may need to load or install the packages: nbc4va.
>
> test_check("openVA")
InSilicoVA Sampler Initiated, 200 Iterations to Sample
Error in .jcall(obj, "[D", "Fit", dimensions.j, probbase.j, probbase_order.j, :
java.awt.HeadlessException:
The application does not have desktop access,
but this program performed an operation which requires it.
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Start re-sampling for significant Tariff cells
Calculating ranks
InSilicoVA Sampler Initiated, 200 Iterations to Sample
Error in .jcall(obj, "[D", "Fit", dimensions.j, probbase.j, probbase_order.j, :
java.awt.HeadlessException:
The application does not have desktop access,
but this program performed an operation which requires it.
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 246 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('tests.algorithm.r:24:3'): Insilico - ID and output correct ──────────
Error in `insilico.fit(data = data, isNumeric = isNumeric, updateCondProb = updateCondProb,
keepProbbase.level = keepProbbase.level, CondProb = CondProb,
CondProbNum = CondProbNum, datacheck = FALSE, datacheck.missing = FALSE,
warning.write = FALSE, external.sep = FALSE, Nsim = Nsim,
thin = thin, burnin = burnin, auto.length = auto.length,
conv.csmf = conv.csmf, jump.scale = jump.scale, levels.prior = levels.prior,
levels.strength = levels.strength, trunc.min = trunc.min,
trunc.max = trunc.max, subpop = subpop, java_option = java_option,
seed = seed, phy.code = phy.code, phy.cat = phy.cat, phy.unknown = phy.unknown,
phy.external = phy.external, phy.debias = phy.debias, exclude.impossible.cause = FALSE,
indiv.CI = indiv.CI, impossible.combination = impossible.combination,
customization.dev = TRUE, Probbase_by_symp.dev = FALSE, probbase.dev = probbase.touse,
table.dev = table.alpha, table.num.dev = table.num, gstable.dev = colnames(probbase.touse),
nlevel.dev = 15)`:
Backtrace:
▆
1. └─openVA::codeVA(...) at tests.algorithm.r:24:3
2. ├─base::do.call("insilico.train", pairlist(args)[[1]][-1])
3. └─InSilicoVA::insilico.train(...)
4. └─InSilicoVA::insilico.fit(...)
── Error ('tests.stackplot.r:22:1'): (code run outside of `test_that()`) ───────
Error in `insilico.fit(data = data, isNumeric = isNumeric, updateCondProb = updateCondProb,
keepProbbase.level = keepProbbase.level, CondProb = CondProb,
CondProbNum = CondProbNum, datacheck = FALSE, datacheck.missing = FALSE,
warning.write = FALSE, external.sep = FALSE, Nsim = Nsim,
thin = thin, burnin = burnin, auto.length = auto.length,
conv.csmf = conv.csmf, jump.scale = jump.scale, levels.prior = levels.prior,
levels.strength = levels.strength, trunc.min = trunc.min,
trunc.max = trunc.max, subpop = subpop, java_option = java_option,
seed = seed, phy.code = phy.code, phy.cat = phy.cat, phy.unknown = phy.unknown,
phy.external = phy.external, phy.debias = phy.debias, exclude.impossible.cause = FALSE,
indiv.CI = indiv.CI, impossible.combination = impossible.combination,
customization.dev = TRUE, Probbase_by_symp.dev = FALSE, probbase.dev = probbase.touse,
table.dev = table.alpha, table.num.dev = table.num, gstable.dev = colnames(probbase.touse),
nlevel.dev = 15)`:
Backtrace:
▆
1. └─openVA::codeVA(...) at tests.stackplot.r:22:1
2. ├─base::do.call("insilico.train", pairlist(args)[[1]][-1])
3. └─InSilicoVA::insilico.train(...)
4. └─InSilicoVA::insilico.fit(...)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 246 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64