Last updated on 2026-02-12 01:52:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.6 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 1.2.6 | 55.81 | 63.04 | 118.85 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.6 | 136.00 | 133.14 | 269.14 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.6 | 150.00 | 138.87 | 288.87 | OK | |
| r-devel-macos-arm64 | 1.2.6 | 17.00 | 11.00 | 28.00 | ERROR | |
| r-devel-windows-x86_64 | 1.2.6 | 84.00 | 133.00 | 217.00 | OK | |
| r-patched-linux-x86_64 | 1.2.6 | 76.09 | 78.24 | 154.33 | OK | |
| r-release-linux-x86_64 | 1.2.6 | 74.56 | 79.38 | 153.94 | OK | |
| r-release-macos-arm64 | 1.2.6 | OK | ||||
| r-release-macos-x86_64 | 1.2.6 | 44.00 | 67.00 | 111.00 | OK | |
| r-release-windows-x86_64 | 1.2.6 | 82.00 | 116.00 | 198.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.6 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.2.6 | 53.00 | 196.00 | 249.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.2.6 | 100.00 | 154.00 | 254.00 | OK |
Version: 1.2.6
Check: examples
Result: ERROR
Running examples in ‘pdSpecEst-Ex.R’ failed
The error most likely occurred in:
> ### Name: Expm
> ### Title: Riemannian HPD exponential map
> ### Aliases: Expm
>
> ### ** Examples
>
> ## Generate random Hermitian matrix
> H <- matrix(complex(real = rnorm(9), imaginary = rnorm(9)), nrow = 3)
> diag(H) <- rnorm(3)
> H[lower.tri(H)] <- t(Conj(H))[lower.tri(H)]
> ## Generate random HPD matrix
> p <- matrix(complex(real = rnorm(9), imaginary = rnorm(9)), nrow = 3)
> P <- t(Conj(p)) %*% p
> ## Compute exponential map
> Expm(P, H)
Error: sqrtmat_sympd(): transformation failed
Execution halted
Flavor: r-devel-macos-arm64
Version: 1.2.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(pdSpecEst)
>
> test_check("pdSpecEst")
*** caught segfault ***
address 0x0, cause 'invalid permissions'
Traceback:
1: Expm(diag(2, 2), H.coeff(v0/sqrt(2 * pi) * exp(-((t - 0.5)/0.3)^2/2), inverse = TRUE))
2: FUN(X[[i]], ...)
3: lapply(X = X, FUN = FUN, ...)
4: sapply(x, function(t) { Expm(diag(2, 2), H.coeff(v0/sqrt(2 * pi) * exp(-((t - 0.5)/0.3)^2/2), inverse = TRUE))}, simplify = "array")
5: rExamples1D(n, 2, "gaussian", return.ts = T, noise = "periodogram")
6: eval(code, test_env)
7: eval(code, test_env)
8: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
15: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
16: test_code(code, parent.frame())
17: test_that("Correctly working 1D spectral estimation and clustering", { n <- 2^7 d <- 2 S <- 5 example <- rExamples1D(n, 2, "gaussian", return.ts = T, noise = "periodogram") expect_equal(dim(example$f), c(d, d, n)) expect_equal(dim(example$P), c(d, d, n)) expect_equal(dim(example$ts), c(2 * n, d)) ts.sim <- rARMA(n, d, array(0, c(d, d, 2)), array(0, c(d, d, 2)), diag(d)) expect_type(ts.sim$X, "double") expect_equal(dim(ts.sim$X), c(n, d)) pgram <- pdPgram(example$ts) expect_equal(dim(pgram$P), c(d, d, n)) expect_equal(length(pgram$freq), n) expect_equal(pgram$P, example$P) wt1 <- WavTransf1D(example$P, periodic = T) wt2 <- WavTransf1D(example$P, metric = "logEuclidean") expect_equal(length(unlist(wt1$D)), length(unlist(wt1$D.white))) expect_equal(length(unlist(wt2$D)), length(unlist(wt2$D.white))) expect_equal(InvWavTransf1D(wt1$D, wt1$M0, periodic = T), example$P) expect_equal(InvWavTransf1D(wt2$D, wt2$M0, metric = "logEuclidean"), example$P) wt1_den <- pdCART(wt1$D, wt1$D.white, order = 5, periodic = T) wt2_den <- pdCART(wt2$D, wt2$D.white, order = 5) expect_length(unlist(wt1_den$w), length(unlist(wt2_den$w))) expect_length(unlist(wt1_den$D_w), length(unlist(wt1$D))) expect_length(unlist(wt2_den$D_w), length(unlist(wt2$D))) f1 <- pdSpecEst1D(example$P) f2 <- pdSpecEst1D(example$P, metric = "logEuclidean") expect_is(f1$f, is(example$P)) expect_equal(dim(f1$f), dim(example$P)) expect_type(f1$D[[1]], "complex") expect_type(f2$D[[1]], "complex") expect_length(unlist(f1$D), 300) expect_length(unlist(f2$D), 300) expect_length(c(f1$M0), 20) expect_length(c(f2$M0), 20) expect_type(f1$tree.weights[[1]], "logical") expect_type(f2$tree.weights[[1]], "logical") expect_length(unlist(f1$tree.weights), 62) expect_length(unlist(f2$tree.weights), 62) cl <- pdkMeans(example$P[, , 1:10], K = 2) expect_true(all(cl$cl.assignments %in% c(0, 1))) expect_equal(sum(cl$cl.assignments), 10) expect_equal(dim(cl$cl.assignments), c(10, 2)) expect_equal(dim(cl$cl.centroids), c(2, 2, 2)) P_s <- rExamples1D(n, 2, "gaussian", replicates = S)$P cl <- pdSpecClust1D(P_s, K = 2, metric = "logEuclidean") expect_equal(sum(cl$cl.prob), S) expect_length(cl$cl.centers.D, 2) expect_length(unlist(cl$cl.centers.D[[1]]), 300) expect_length(unlist(cl$cl.centers.D[[2]]), 300) expect_equal(dim(cl$cl.centers.M0[[1]]), dim(wt1$M0)) expect_equal(dim(cl$cl.centers.M0[[2]]), dim(wt1$M0)) expect_type(cl$cl.jmax, "double") f3 <- pdSplineReg(example$f, example$f, lam = 0.1, Nd = 10, max.iter = 10) expect_equal(dim(f3$f), c(d, d, 10)) expect_type(f3$cost, "double") expect_type(f3$total_iter, "double") })
18: eval(code, test_env)
19: eval(code, test_env)
20: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
21: doTryCatch(return(expr), name, parentenv, handler)
22: tryCatchOne(expr, names, parentenv, handlers[[1L]])
23: tryCatchList(expr, classes, parentenv, handlers)
24: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
25: doWithOneRestart(return(expr), restart)
26: withOneRestart(expr, restarts[[1L]])
27: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
28: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
29: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
30: FUN(X[[i]], ...)
31: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
32: doTryCatch(return(expr), name, parentenv, handler)
33: tryCatchOne(expr, names, parentenv, handlers[[1L]])
34: tryCatchList(expr, classes, parentenv, handlers)
35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
40: test_check("pdSpecEst")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-macos-arm64
Version: 1.2.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
sh: line 1: 6231 Segmentation fault: 11 '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo > '/Volumes/Temp/tmp/RtmpAVnHG4/filef15c155af6' 2>&1 < '/Volumes/Temp/tmp/RtmpAVnHG4/filef154e06d2ac'
--- re-building ‘depth_ranktests.Rmd’ using rmarkdown
*** caught segfault ***
address 0x0, cause 'invalid permissions'
Traceback:
1: Expm(diag(2), H.coeff(0.5 * rnorm(4), inverse = T))
2: FUN(X[[i]], ...)
3: lapply(X = X, FUN = FUN, ...)
4: sapply(integer(n), eval.parent(substitute(function(...) expr)), simplify = simplify)
5: replicate(50, Expm(diag(2), H.coeff(0.5 * rnorm(4), inverse = T)))
6: eval(expr, envir)
7: eval(expr, envir)
8: withVisible(eval(expr, envir))
9: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
10: eval(call)
11: eval(call)
12: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
15: withRestartList(expr, restarts[-nr])
16: doWithOneRestart(return(expr), restart)
17: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
18: withRestartList(expr, restarts)
19: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
20: evaluate::evaluate(...)
21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
22: in_dir(input_dir(), expr)
23: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
24: eng_r(options)
25: block_exec(params)
26: call_block(x)
27: process_group(group)
28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
29: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
30: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
40: tools:::.buildOneVignette("depth_ranktests.Rmd", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/pdSpecEst.Rcheck/vign_test/pdSpecEst", TRUE, FALSE, "depth_ranktests", "UTF-8", "/Volumes/Temp/tmp/RtmpAVnHG4/filef154668d37f.rds")
An irrecoverable exception occurred. R is aborting now ...
sh: line 1: 6518 Segmentation fault: 11 '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo > '/Volumes/Temp/tmp/RtmpAVnHG4/filef156632bd97' 2>&1 < '/Volumes/Temp/tmp/RtmpAVnHG4/filef15d3d38ec'
--- re-building ‘wavelet_est_clust.Rmd’ using rmarkdown
*** caught segfault ***
address 0xfe000000786564, cause 'invalid permissions'
Traceback:
1: Expm(diag(3), (1 - 0.4 * t) * H.coeff(sqrt(t * (1 - t) + 1) * sin(pi/(0.4 * t + 0.1)) * (1 + Bumps), inverse = TRUE))
2: FUN(X[[i]], ...)
3: lapply(X = X, FUN = FUN, ...)
4: sapply(x, function(t) { Expm(diag(3), (1 - 0.4 * t) * H.coeff(sqrt(t * (1 - t) + 1) * sin(pi/(0.4 * t + 0.1)) * (1 + Bumps), inverse = TRUE))}, simplify = "array")
5: rExamples1D(n, example = "bumps", return.ts = T, noise = "periodogram")
6: eval(expr, envir)
7: eval(expr, envir)
8: withVisible(eval(expr, envir))
9: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
10: eval(call)
11: eval(call)
12: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
13: doWithOneRestart(return(expr), restart)
14: withOneRestart(expr, restarts[[1L]])
15: withRestartList(expr, restarts[-nr])
16: doWithOneRestart(return(expr), restart)
17: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
18: withRestartList(expr, restarts)
19: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
20: evaluate::evaluate(...)
21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
22: in_dir(input_dir(), expr)
23: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
24: eng_r(options)
25: block_exec(params)
26: call_block(x)
27: process_group(group)
28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
29: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
30: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
40: tools:::.buildOneVignette("wavelet_est_clust.Rmd", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/pdSpecEst.Rcheck/vign_test/pdSpecEst", TRUE, FALSE, "wavelet_est_clust", "UTF-8", "/Volumes/Temp/tmp/RtmpAVnHG4/filef1521f14239.rds")
An irrecoverable exception occurred. R is aborting now ...
SUMMARY: processing the following files failed:
‘depth_ranktests.Rmd’ ‘wavelet_est_clust.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-macos-arm64
Version: 1.2.6
Check: installed package size
Result: NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
libs 6.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64